Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4822

Experiment: antimonate 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4820 and Pf6N2E2_4821 overlap by 4 nucleotidesPf6N2E2_4821 and Pf6N2E2_4822 are separated by 70 nucleotidesPf6N2E2_4822 and Pf6N2E2_4823 are separated by 126 nucleotides Pf6N2E2_4820 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 5,573,725 to 5,574,399 _4820 Pf6N2E2_4821 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 5,574,396 to 5,575,214 _4821 Pf6N2E2_4822 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 5,575,285 to 5,576,766 _4822 Pf6N2E2_4823 - Phospholipase/lecithinase/hemolysin, at 5,576,893 to 5,578,866 _4823 Position (kb) 5575 5576 5577Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5574.550 kb on + strand, within Pf6N2E2_4821at 5574.764 kb on + strand, within Pf6N2E2_4821at 5574.764 kb on + strand, within Pf6N2E2_4821at 5574.765 kb on - strand, within Pf6N2E2_4821at 5574.765 kb on - strand, within Pf6N2E2_4821at 5574.848 kb on + strand, within Pf6N2E2_4821at 5574.999 kb on + strand, within Pf6N2E2_4821at 5575.006 kb on - strand, within Pf6N2E2_4821at 5575.069 kb on + strand, within Pf6N2E2_4821at 5575.069 kb on + strand, within Pf6N2E2_4821at 5575.069 kb on + strand, within Pf6N2E2_4821at 5575.070 kb on - strand, within Pf6N2E2_4821at 5575.102 kb on + strand, within Pf6N2E2_4821at 5575.102 kb on + strand, within Pf6N2E2_4821at 5575.102 kb on + strand, within Pf6N2E2_4821at 5575.103 kb on - strand, within Pf6N2E2_4821at 5575.103 kb on - strand, within Pf6N2E2_4821at 5575.103 kb on - strand, within Pf6N2E2_4821at 5575.103 kb on - strand, within Pf6N2E2_4821at 5575.103 kb on - strand, within Pf6N2E2_4821at 5575.248 kb on + strandat 5575.248 kb on + strandat 5575.249 kb on - strandat 5575.249 kb on - strandat 5575.324 kb on + strandat 5575.325 kb on - strandat 5575.385 kb on - strandat 5575.385 kb on - strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.414 kb on + strandat 5575.415 kb on - strandat 5575.415 kb on - strandat 5575.456 kb on + strand, within Pf6N2E2_4822at 5575.594 kb on + strand, within Pf6N2E2_4822at 5575.594 kb on + strand, within Pf6N2E2_4822at 5575.648 kb on + strand, within Pf6N2E2_4822at 5575.673 kb on - strand, within Pf6N2E2_4822at 5575.673 kb on - strand, within Pf6N2E2_4822at 5575.729 kb on - strand, within Pf6N2E2_4822at 5575.826 kb on - strand, within Pf6N2E2_4822at 5575.826 kb on - strand, within Pf6N2E2_4822at 5575.868 kb on + strand, within Pf6N2E2_4822at 5575.960 kb on + strand, within Pf6N2E2_4822at 5575.960 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.990 kb on + strand, within Pf6N2E2_4822at 5575.991 kb on - strand, within Pf6N2E2_4822at 5575.991 kb on - strand, within Pf6N2E2_4822at 5575.991 kb on - strand, within Pf6N2E2_4822at 5576.018 kb on + strand, within Pf6N2E2_4822at 5576.018 kb on + strand, within Pf6N2E2_4822at 5576.019 kb on - strand, within Pf6N2E2_4822at 5576.019 kb on - strand, within Pf6N2E2_4822at 5576.104 kb on + strand, within Pf6N2E2_4822at 5576.104 kb on + strand, within Pf6N2E2_4822at 5576.104 kb on + strand, within Pf6N2E2_4822at 5576.104 kb on + strand, within Pf6N2E2_4822at 5576.104 kb on + strand, within Pf6N2E2_4822at 5576.104 kb on + strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.105 kb on - strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.110 kb on + strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.111 kb on - strand, within Pf6N2E2_4822at 5576.551 kb on + strand, within Pf6N2E2_4822at 5576.569 kb on + strand, within Pf6N2E2_4822at 5576.645 kb on + strandat 5576.645 kb on + strandat 5576.645 kb on + strandat 5576.645 kb on + strandat 5576.645 kb on + strandat 5576.646 kb on - strandat 5576.646 kb on - strandat 5576.661 kb on + strandat 5576.826 kb on + strandat 5576.826 kb on + strandat 5576.826 kb on + strandat 5576.827 kb on - strandat 5576.921 kb on - strandat 5576.921 kb on - strandat 5576.921 kb on - strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.958 kb on + strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.959 kb on - strandat 5576.960 kb on + strandat 5576.977 kb on + strandat 5576.977 kb on + strandat 5576.977 kb on + strandat 5576.977 kb on + strandat 5576.977 kb on + strandat 5576.978 kb on - strandat 5576.978 kb on - strandat 5576.978 kb on - strandat 5577.022 kb on - strandat 5577.022 kb on - strandat 5577.042 kb on - strandat 5577.131 kb on + strand, within Pf6N2E2_4823at 5577.132 kb on - strand, within Pf6N2E2_4823at 5577.132 kb on - strand, within Pf6N2E2_4823at 5577.167 kb on + strand, within Pf6N2E2_4823at 5577.168 kb on - strand, within Pf6N2E2_4823at 5577.168 kb on - strand, within Pf6N2E2_4823at 5577.168 kb on - strand, within Pf6N2E2_4823at 5577.168 kb on - strand, within Pf6N2E2_4823at 5577.168 kb on - strand, within Pf6N2E2_4823at 5577.168 kb on - strand, within Pf6N2E2_4823at 5577.281 kb on + strand, within Pf6N2E2_4823at 5577.282 kb on - strand, within Pf6N2E2_4823at 5577.354 kb on + strand, within Pf6N2E2_4823at 5577.354 kb on + strand, within Pf6N2E2_4823at 5577.354 kb on + strand, within Pf6N2E2_4823at 5577.515 kb on + strand, within Pf6N2E2_4823at 5577.515 kb on + strand, within Pf6N2E2_4823at 5577.515 kb on + strand, within Pf6N2E2_4823at 5577.515 kb on + strand, within Pf6N2E2_4823at 5577.515 kb on + strand, within Pf6N2E2_4823at 5577.516 kb on - strand, within Pf6N2E2_4823at 5577.516 kb on - strand, within Pf6N2E2_4823at 5577.516 kb on - strand, within Pf6N2E2_4823at 5577.516 kb on - strand, within Pf6N2E2_4823at 5577.519 kb on + strand, within Pf6N2E2_4823at 5577.519 kb on + strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.520 kb on - strand, within Pf6N2E2_4823at 5577.530 kb on + strand, within Pf6N2E2_4823at 5577.531 kb on - strand, within Pf6N2E2_4823at 5577.531 kb on - strand, within Pf6N2E2_4823at 5577.589 kb on + strand, within Pf6N2E2_4823at 5577.589 kb on + strand, within Pf6N2E2_4823at 5577.589 kb on + strand, within Pf6N2E2_4823at 5577.590 kb on - strand, within Pf6N2E2_4823at 5577.590 kb on - strand, within Pf6N2E2_4823at 5577.590 kb on - strand, within Pf6N2E2_4823at 5577.590 kb on - strand, within Pf6N2E2_4823

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Per-strain Table

Position Strand Gene LocusTag Fraction antimonate 0.005 M
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5,574,550 + Pf6N2E2_4821 0.19 -1.9
5,574,764 + Pf6N2E2_4821 0.45 -0.4
5,574,764 + Pf6N2E2_4821 0.45 -0.9
5,574,765 - Pf6N2E2_4821 0.45 -0.7
5,574,765 - Pf6N2E2_4821 0.45 -0.2
5,574,848 + Pf6N2E2_4821 0.55 -0.1
5,574,999 + Pf6N2E2_4821 0.74 -0.7
5,575,006 - Pf6N2E2_4821 0.74 -0.4
5,575,069 + Pf6N2E2_4821 0.82 -0.0
5,575,069 + Pf6N2E2_4821 0.82 +1.4
5,575,069 + Pf6N2E2_4821 0.82 +0.7
5,575,070 - Pf6N2E2_4821 0.82 +0.4
5,575,102 + Pf6N2E2_4821 0.86 +0.6
5,575,102 + Pf6N2E2_4821 0.86 -0.7
5,575,102 + Pf6N2E2_4821 0.86 -1.7
5,575,103 - Pf6N2E2_4821 0.86 +0.0
5,575,103 - Pf6N2E2_4821 0.86 +0.8
5,575,103 - Pf6N2E2_4821 0.86 -1.3
5,575,103 - Pf6N2E2_4821 0.86 +1.1
5,575,103 - Pf6N2E2_4821 0.86 -1.5
5,575,248 + +0.1
5,575,248 + -2.1
5,575,249 - +1.5
5,575,249 - +0.7
5,575,324 + +0.4
5,575,325 - +0.5
5,575,385 - +0.7
5,575,385 - +0.5
5,575,414 + +0.6
5,575,414 + -0.2
5,575,414 + -1.1
5,575,414 + +0.6
5,575,414 + -0.4
5,575,414 + -0.6
5,575,414 + -0.4
5,575,414 + +0.5
5,575,415 - -0.4
5,575,415 - +1.1
5,575,456 + Pf6N2E2_4822 0.12 +0.9
5,575,594 + Pf6N2E2_4822 0.21 -0.2
5,575,594 + Pf6N2E2_4822 0.21 -0.9
5,575,648 + Pf6N2E2_4822 0.24 -0.1
5,575,673 - Pf6N2E2_4822 0.26 +0.8
5,575,673 - Pf6N2E2_4822 0.26 -1.3
5,575,729 - Pf6N2E2_4822 0.30 -0.1
5,575,826 - Pf6N2E2_4822 0.37 -0.3
5,575,826 - Pf6N2E2_4822 0.37 -1.0
5,575,868 + Pf6N2E2_4822 0.39 +0.0
5,575,960 + Pf6N2E2_4822 0.46 +0.0
5,575,960 + Pf6N2E2_4822 0.46 +0.5
5,575,990 + Pf6N2E2_4822 0.48 +2.8
5,575,990 + Pf6N2E2_4822 0.48 +0.7
5,575,990 + Pf6N2E2_4822 0.48 -1.2
5,575,990 + Pf6N2E2_4822 0.48 -0.1
5,575,990 + Pf6N2E2_4822 0.48 +0.3
5,575,990 + Pf6N2E2_4822 0.48 +0.8
5,575,990 + Pf6N2E2_4822 0.48 -0.4
5,575,990 + Pf6N2E2_4822 0.48 -0.4
5,575,990 + Pf6N2E2_4822 0.48 +0.4
5,575,991 - Pf6N2E2_4822 0.48 +0.0
5,575,991 - Pf6N2E2_4822 0.48 +0.6
5,575,991 - Pf6N2E2_4822 0.48 -0.2
5,576,018 + Pf6N2E2_4822 0.49 -0.7
5,576,018 + Pf6N2E2_4822 0.49 -0.2
5,576,019 - Pf6N2E2_4822 0.50 +1.0
5,576,019 - Pf6N2E2_4822 0.50 -0.1
5,576,104 + Pf6N2E2_4822 0.55 -0.6
5,576,104 + Pf6N2E2_4822 0.55 +0.2
5,576,104 + Pf6N2E2_4822 0.55 -0.0
5,576,104 + Pf6N2E2_4822 0.55 +0.8
5,576,104 + Pf6N2E2_4822 0.55 +0.8
5,576,104 + Pf6N2E2_4822 0.55 +0.2
5,576,105 - Pf6N2E2_4822 0.55 +1.8
5,576,105 - Pf6N2E2_4822 0.55 -0.1
5,576,105 - Pf6N2E2_4822 0.55 +0.5
5,576,105 - Pf6N2E2_4822 0.55 +0.1
5,576,105 - Pf6N2E2_4822 0.55 -0.0
5,576,105 - Pf6N2E2_4822 0.55 +0.3
5,576,105 - Pf6N2E2_4822 0.55 +0.2
5,576,105 - Pf6N2E2_4822 0.55 -0.3
5,576,105 - Pf6N2E2_4822 0.55 -0.8
5,576,110 + Pf6N2E2_4822 0.56 +0.5
5,576,110 + Pf6N2E2_4822 0.56 -0.2
5,576,110 + Pf6N2E2_4822 0.56 +1.4
5,576,110 + Pf6N2E2_4822 0.56 -0.5
5,576,110 + Pf6N2E2_4822 0.56 -0.3
5,576,110 + Pf6N2E2_4822 0.56 +0.3
5,576,110 + Pf6N2E2_4822 0.56 -0.1
5,576,110 + Pf6N2E2_4822 0.56 +0.1
5,576,110 + Pf6N2E2_4822 0.56 -0.1
5,576,111 - Pf6N2E2_4822 0.56 +1.2
5,576,111 - Pf6N2E2_4822 0.56 -1.4
5,576,111 - Pf6N2E2_4822 0.56 -0.7
5,576,111 - Pf6N2E2_4822 0.56 -1.6
5,576,111 - Pf6N2E2_4822 0.56 -0.3
5,576,111 - Pf6N2E2_4822 0.56 -0.1
5,576,111 - Pf6N2E2_4822 0.56 -1.4
5,576,111 - Pf6N2E2_4822 0.56 +0.6
5,576,111 - Pf6N2E2_4822 0.56 +0.0
5,576,551 + Pf6N2E2_4822 0.85 -0.6
5,576,569 + Pf6N2E2_4822 0.87 -2.0
5,576,645 + +0.6
5,576,645 + -0.1
5,576,645 + +0.2
5,576,645 + +0.2
5,576,645 + -1.0
5,576,646 - +1.0
5,576,646 - +0.7
5,576,661 + -0.8
5,576,826 + +0.1
5,576,826 + -0.4
5,576,826 + -2.0
5,576,827 - -0.1
5,576,921 - -0.1
5,576,921 - +0.5
5,576,921 - -0.0
5,576,958 + +1.4
5,576,958 + -0.3
5,576,958 + -1.1
5,576,958 + -0.4
5,576,958 + -0.9
5,576,958 + -0.9
5,576,958 + -2.0
5,576,958 + -0.2
5,576,958 + -0.4
5,576,959 - -0.1
5,576,959 - -0.8
5,576,959 - -1.3
5,576,959 - +0.5
5,576,959 - +0.1
5,576,959 - +0.3
5,576,959 - +0.0
5,576,959 - +0.3
5,576,959 - -0.6
5,576,959 - +1.1
5,576,960 + +1.1
5,576,977 + +1.8
5,576,977 + +0.4
5,576,977 + +0.1
5,576,977 + +0.1
5,576,977 + -0.3
5,576,978 - -0.1
5,576,978 - +0.6
5,576,978 - +0.4
5,577,022 - +0.5
5,577,022 - +0.6
5,577,042 - +0.9
5,577,131 + Pf6N2E2_4823 0.12 +0.3
5,577,132 - Pf6N2E2_4823 0.12 -0.1
5,577,132 - Pf6N2E2_4823 0.12 -2.0
5,577,167 + Pf6N2E2_4823 0.14 +0.6
5,577,168 - Pf6N2E2_4823 0.14 +2.2
5,577,168 - Pf6N2E2_4823 0.14 -1.2
5,577,168 - Pf6N2E2_4823 0.14 -0.2
5,577,168 - Pf6N2E2_4823 0.14 -0.0
5,577,168 - Pf6N2E2_4823 0.14 -0.7
5,577,168 - Pf6N2E2_4823 0.14 -1.0
5,577,281 + Pf6N2E2_4823 0.20 +0.3
5,577,282 - Pf6N2E2_4823 0.20 -1.1
5,577,354 + Pf6N2E2_4823 0.23 -2.1
5,577,354 + Pf6N2E2_4823 0.23 +0.8
5,577,354 + Pf6N2E2_4823 0.23 -0.9
5,577,515 + Pf6N2E2_4823 0.32 -1.7
5,577,515 + Pf6N2E2_4823 0.32 -0.5
5,577,515 + Pf6N2E2_4823 0.32 +0.8
5,577,515 + Pf6N2E2_4823 0.32 +1.4
5,577,515 + Pf6N2E2_4823 0.32 +0.8
5,577,516 - Pf6N2E2_4823 0.32 +0.2
5,577,516 - Pf6N2E2_4823 0.32 +0.0
5,577,516 - Pf6N2E2_4823 0.32 -1.9
5,577,516 - Pf6N2E2_4823 0.32 -0.6
5,577,519 + Pf6N2E2_4823 0.32 +0.5
5,577,519 + Pf6N2E2_4823 0.32 +0.3
5,577,520 - Pf6N2E2_4823 0.32 -0.1
5,577,520 - Pf6N2E2_4823 0.32 +1.9
5,577,520 - Pf6N2E2_4823 0.32 -2.2
5,577,520 - Pf6N2E2_4823 0.32 +0.9
5,577,520 - Pf6N2E2_4823 0.32 -1.0
5,577,520 - Pf6N2E2_4823 0.32 +0.3
5,577,520 - Pf6N2E2_4823 0.32 +0.1
5,577,530 + Pf6N2E2_4823 0.32 +0.3
5,577,531 - Pf6N2E2_4823 0.32 +0.0
5,577,531 - Pf6N2E2_4823 0.32 +0.1
5,577,589 + Pf6N2E2_4823 0.35 -1.0
5,577,589 + Pf6N2E2_4823 0.35 -0.3
5,577,589 + Pf6N2E2_4823 0.35 -0.3
5,577,590 - Pf6N2E2_4823 0.35 +0.9
5,577,590 - Pf6N2E2_4823 0.35 +1.0
5,577,590 - Pf6N2E2_4823 0.35 +1.0
5,577,590 - Pf6N2E2_4823 0.35 +0.2

Or see this region's nucleotide sequence