Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4129 and Pf6N2E2_4130 are separated by 13 nucleotides Pf6N2E2_4130 and Pf6N2E2_4131 are separated by 115 nucleotides Pf6N2E2_4131 and Pf6N2E2_4132 are separated by 195 nucleotides
Pf6N2E2_4129 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 4,807,587 to 4,808,501
_4129
Pf6N2E2_4130 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 4,808,515 to 4,809,336
_4130
Pf6N2E2_4131 - Sulfate permease, at 4,809,452 to 4,811,020
_4131
Pf6N2E2_4132 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 4,811,216 to 4,812,136
_4132
Position (kb)
4809
4810
4811
4812 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4808.524 kb on + strand at 4809.385 kb on - strand at 4809.389 kb on + strand at 4809.389 kb on + strand at 4809.453 kb on + strand at 4809.601 kb on - strand at 4809.675 kb on + strand, within Pf6N2E2_4131 at 4809.675 kb on + strand, within Pf6N2E2_4131 at 4809.676 kb on - strand, within Pf6N2E2_4131 at 4809.676 kb on - strand, within Pf6N2E2_4131 at 4809.775 kb on - strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.804 kb on + strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.805 kb on - strand, within Pf6N2E2_4131 at 4809.857 kb on + strand, within Pf6N2E2_4131 at 4809.885 kb on + strand, within Pf6N2E2_4131 at 4809.886 kb on - strand, within Pf6N2E2_4131 at 4810.056 kb on + strand, within Pf6N2E2_4131 at 4810.056 kb on + strand, within Pf6N2E2_4131 at 4810.056 kb on + strand, within Pf6N2E2_4131 at 4810.057 kb on - strand, within Pf6N2E2_4131 at 4810.472 kb on - strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.713 kb on + strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.714 kb on - strand, within Pf6N2E2_4131 at 4810.755 kb on + strand, within Pf6N2E2_4131 at 4810.755 kb on + strand, within Pf6N2E2_4131 at 4810.756 kb on - strand, within Pf6N2E2_4131 at 4810.756 kb on - strand, within Pf6N2E2_4131 at 4810.848 kb on + strand, within Pf6N2E2_4131 at 4810.848 kb on + strand, within Pf6N2E2_4131 at 4810.848 kb on + strand, within Pf6N2E2_4131 at 4810.849 kb on - strand, within Pf6N2E2_4131 at 4810.849 kb on - strand, within Pf6N2E2_4131 at 4810.849 kb on - strand, within Pf6N2E2_4131 at 4810.849 kb on - strand, within Pf6N2E2_4131 at 4810.887 kb on + strand at 4811.052 kb on + strand at 4811.052 kb on + strand at 4811.052 kb on + strand at 4811.052 kb on + strand at 4811.053 kb on - strand at 4811.053 kb on - strand at 4811.053 kb on - strand at 4811.138 kb on + strand at 4811.217 kb on + strand at 4811.217 kb on + strand at 4811.218 kb on - strand at 4811.440 kb on - strand, within Pf6N2E2_4132 at 4811.458 kb on + strand, within Pf6N2E2_4132 at 4811.460 kb on + strand, within Pf6N2E2_4132 at 4811.460 kb on + strand, within Pf6N2E2_4132 at 4811.460 kb on + strand, within Pf6N2E2_4132 at 4811.460 kb on + strand, within Pf6N2E2_4132 at 4811.461 kb on - strand, within Pf6N2E2_4132 at 4811.461 kb on - strand, within Pf6N2E2_4132 at 4811.461 kb on - strand, within Pf6N2E2_4132 at 4811.484 kb on + strand, within Pf6N2E2_4132 at 4811.484 kb on + strand, within Pf6N2E2_4132 at 4811.485 kb on - strand, within Pf6N2E2_4132 at 4811.505 kb on + strand, within Pf6N2E2_4132 at 4811.505 kb on + strand, within Pf6N2E2_4132 at 4811.506 kb on - strand, within Pf6N2E2_4132 at 4811.506 kb on - strand, within Pf6N2E2_4132 at 4811.506 kb on - strand, within Pf6N2E2_4132 at 4811.709 kb on + strand, within Pf6N2E2_4132 at 4811.709 kb on + strand, within Pf6N2E2_4132 at 4811.709 kb on + strand, within Pf6N2E2_4132 at 4811.709 kb on + strand, within Pf6N2E2_4132 at 4811.710 kb on - strand, within Pf6N2E2_4132 at 4811.710 kb on - strand, within Pf6N2E2_4132 at 4811.758 kb on + strand, within Pf6N2E2_4132 at 4811.758 kb on + strand, within Pf6N2E2_4132 at 4811.759 kb on - strand, within Pf6N2E2_4132 at 4811.781 kb on + strand, within Pf6N2E2_4132 at 4811.781 kb on + strand, within Pf6N2E2_4132 at 4811.781 kb on + strand, within Pf6N2E2_4132 at 4811.781 kb on + strand, within Pf6N2E2_4132 at 4811.781 kb on + strand, within Pf6N2E2_4132 at 4811.781 kb on + strand, within Pf6N2E2_4132 at 4811.782 kb on - strand, within Pf6N2E2_4132 at 4811.782 kb on - strand, within Pf6N2E2_4132 at 4811.782 kb on - strand, within Pf6N2E2_4132 at 4811.865 kb on + strand, within Pf6N2E2_4132 at 4811.973 kb on + strand, within Pf6N2E2_4132 at 4811.974 kb on - strand, within Pf6N2E2_4132 at 4811.974 kb on - strand, within Pf6N2E2_4132
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 4,808,524 + -0.3 4,809,385 - +1.2 4,809,389 + -0.8 4,809,389 + -0.5 4,809,453 + +0.3 4,809,601 - +0.0 4,809,675 + Pf6N2E2_4131 0.14 -0.5 4,809,675 + Pf6N2E2_4131 0.14 -0.4 4,809,676 - Pf6N2E2_4131 0.14 -1.0 4,809,676 - Pf6N2E2_4131 0.14 -0.8 4,809,775 - Pf6N2E2_4131 0.21 +0.8 4,809,804 + Pf6N2E2_4131 0.22 -0.0 4,809,804 + Pf6N2E2_4131 0.22 +0.1 4,809,804 + Pf6N2E2_4131 0.22 +0.7 4,809,804 + Pf6N2E2_4131 0.22 -0.0 4,809,804 + Pf6N2E2_4131 0.22 +0.7 4,809,804 + Pf6N2E2_4131 0.22 -1.1 4,809,804 + Pf6N2E2_4131 0.22 +1.3 4,809,804 + Pf6N2E2_4131 0.22 +0.6 4,809,804 + Pf6N2E2_4131 0.22 +0.5 4,809,805 - Pf6N2E2_4131 0.22 -0.5 4,809,805 - Pf6N2E2_4131 0.22 +1.3 4,809,805 - Pf6N2E2_4131 0.22 +0.1 4,809,805 - Pf6N2E2_4131 0.22 -0.2 4,809,805 - Pf6N2E2_4131 0.22 -0.9 4,809,805 - Pf6N2E2_4131 0.22 -0.1 4,809,805 - Pf6N2E2_4131 0.22 -0.4 4,809,805 - Pf6N2E2_4131 0.22 -0.2 4,809,805 - Pf6N2E2_4131 0.22 +0.3 4,809,857 + Pf6N2E2_4131 0.26 +0.1 4,809,885 + Pf6N2E2_4131 0.28 -1.0 4,809,886 - Pf6N2E2_4131 0.28 +1.0 4,810,056 + Pf6N2E2_4131 0.38 +0.3 4,810,056 + Pf6N2E2_4131 0.38 -0.1 4,810,056 + Pf6N2E2_4131 0.38 +1.2 4,810,057 - Pf6N2E2_4131 0.39 +0.5 4,810,472 - Pf6N2E2_4131 0.65 -0.4 4,810,713 + Pf6N2E2_4131 0.80 +0.2 4,810,713 + Pf6N2E2_4131 0.80 +0.4 4,810,713 + Pf6N2E2_4131 0.80 -0.1 4,810,713 + Pf6N2E2_4131 0.80 +1.2 4,810,713 + Pf6N2E2_4131 0.80 +0.2 4,810,713 + Pf6N2E2_4131 0.80 +0.3 4,810,713 + Pf6N2E2_4131 0.80 -0.9 4,810,713 + Pf6N2E2_4131 0.80 +0.2 4,810,713 + Pf6N2E2_4131 0.80 -0.9 4,810,713 + Pf6N2E2_4131 0.80 +0.1 4,810,713 + Pf6N2E2_4131 0.80 -0.3 4,810,713 + Pf6N2E2_4131 0.80 +0.4 4,810,714 - Pf6N2E2_4131 0.80 -0.2 4,810,714 - Pf6N2E2_4131 0.80 +0.5 4,810,714 - Pf6N2E2_4131 0.80 -0.7 4,810,714 - Pf6N2E2_4131 0.80 +0.2 4,810,714 - Pf6N2E2_4131 0.80 -0.8 4,810,714 - Pf6N2E2_4131 0.80 -1.6 4,810,714 - Pf6N2E2_4131 0.80 +0.0 4,810,714 - Pf6N2E2_4131 0.80 -0.4 4,810,714 - Pf6N2E2_4131 0.80 +0.1 4,810,714 - Pf6N2E2_4131 0.80 -0.2 4,810,755 + Pf6N2E2_4131 0.83 +0.9 4,810,755 + Pf6N2E2_4131 0.83 +2.0 4,810,756 - Pf6N2E2_4131 0.83 +1.3 4,810,756 - Pf6N2E2_4131 0.83 +0.4 4,810,848 + Pf6N2E2_4131 0.89 +1.0 4,810,848 + Pf6N2E2_4131 0.89 +0.1 4,810,848 + Pf6N2E2_4131 0.89 +2.0 4,810,849 - Pf6N2E2_4131 0.89 +1.4 4,810,849 - Pf6N2E2_4131 0.89 -0.8 4,810,849 - Pf6N2E2_4131 0.89 -0.4 4,810,849 - Pf6N2E2_4131 0.89 -1.8 4,810,887 + +0.3 4,811,052 + -0.2 4,811,052 + +0.2 4,811,052 + +0.9 4,811,052 + -0.1 4,811,053 - +0.6 4,811,053 - -0.8 4,811,053 - -1.4 4,811,138 + +0.9 4,811,217 + +0.2 4,811,217 + +0.3 4,811,218 - -1.2 4,811,440 - Pf6N2E2_4132 0.24 -0.8 4,811,458 + Pf6N2E2_4132 0.26 -0.8 4,811,460 + Pf6N2E2_4132 0.26 +1.1 4,811,460 + Pf6N2E2_4132 0.26 -0.5 4,811,460 + Pf6N2E2_4132 0.26 +0.9 4,811,460 + Pf6N2E2_4132 0.26 -0.5 4,811,461 - Pf6N2E2_4132 0.27 -0.8 4,811,461 - Pf6N2E2_4132 0.27 -0.4 4,811,461 - Pf6N2E2_4132 0.27 -1.3 4,811,484 + Pf6N2E2_4132 0.29 +0.3 4,811,484 + Pf6N2E2_4132 0.29 -1.2 4,811,485 - Pf6N2E2_4132 0.29 -0.1 4,811,505 + Pf6N2E2_4132 0.31 +0.5 4,811,505 + Pf6N2E2_4132 0.31 -0.9 4,811,506 - Pf6N2E2_4132 0.31 +0.1 4,811,506 - Pf6N2E2_4132 0.31 +0.4 4,811,506 - Pf6N2E2_4132 0.31 -1.6 4,811,709 + Pf6N2E2_4132 0.54 +0.2 4,811,709 + Pf6N2E2_4132 0.54 +0.7 4,811,709 + Pf6N2E2_4132 0.54 +0.6 4,811,709 + Pf6N2E2_4132 0.54 -0.5 4,811,710 - Pf6N2E2_4132 0.54 -0.2 4,811,710 - Pf6N2E2_4132 0.54 +0.0 4,811,758 + Pf6N2E2_4132 0.59 +0.3 4,811,758 + Pf6N2E2_4132 0.59 +0.5 4,811,759 - Pf6N2E2_4132 0.59 +0.7 4,811,781 + Pf6N2E2_4132 0.61 -2.6 4,811,781 + Pf6N2E2_4132 0.61 +0.2 4,811,781 + Pf6N2E2_4132 0.61 +0.4 4,811,781 + Pf6N2E2_4132 0.61 -0.2 4,811,781 + Pf6N2E2_4132 0.61 -0.1 4,811,781 + Pf6N2E2_4132 0.61 +1.2 4,811,782 - Pf6N2E2_4132 0.61 +0.3 4,811,782 - Pf6N2E2_4132 0.61 +0.9 4,811,782 - Pf6N2E2_4132 0.61 -0.5 4,811,865 + Pf6N2E2_4132 0.70 +0.3 4,811,973 + Pf6N2E2_4132 0.82 -3.4 4,811,974 - Pf6N2E2_4132 0.82 +0.2 4,811,974 - Pf6N2E2_4132 0.82 +0.5
Or see this region's nucleotide sequence