Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4121 and Pf6N2E2_4122 overlap by 4 nucleotides Pf6N2E2_4122 and Pf6N2E2_4123 are separated by 70 nucleotides Pf6N2E2_4123 and Pf6N2E2_4124 are separated by 167 nucleotides
Pf6N2E2_4121 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 4,800,224 to 4,801,534
_4121
Pf6N2E2_4122 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 4,801,531 to 4,802,490
_4122
Pf6N2E2_4123 - Peptide deformylase (EC 3.5.1.88), at 4,802,561 to 4,803,067
_4123
Pf6N2E2_4124 - Uncharacterized protein with LysM domain, COG1652, at 4,803,235 to 4,804,260
_4124
Position (kb)
4801
4802
4803 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4800.933 kb on + strand, within Pf6N2E2_4121 at 4800.934 kb on - strand, within Pf6N2E2_4121 at 4800.982 kb on - strand, within Pf6N2E2_4121 at 4802.495 kb on - strand at 4802.495 kb on - strand at 4802.495 kb on - strand at 4802.506 kb on - strand at 4802.506 kb on - strand at 4802.621 kb on - strand, within Pf6N2E2_4123 at 4803.068 kb on - strand at 4803.068 kb on - strand at 4803.077 kb on - strand at 4803.077 kb on - strand at 4803.077 kb on - strand at 4803.077 kb on - strand at 4803.094 kb on - strand at 4803.094 kb on - strand at 4803.143 kb on - strand at 4803.203 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.217 kb on - strand at 4803.220 kb on - strand at 4803.249 kb on - strand at 4803.325 kb on + strand at 4803.325 kb on + strand at 4803.325 kb on + strand at 4803.325 kb on + strand at 4803.326 kb on - strand at 4803.326 kb on - strand at 4803.370 kb on + strand, within Pf6N2E2_4124 at 4803.370 kb on + strand, within Pf6N2E2_4124 at 4803.370 kb on + strand, within Pf6N2E2_4124 at 4803.370 kb on + strand, within Pf6N2E2_4124 at 4803.370 kb on + strand, within Pf6N2E2_4124 at 4803.370 kb on + strand, within Pf6N2E2_4124 at 4803.371 kb on - strand, within Pf6N2E2_4124 at 4803.371 kb on - strand, within Pf6N2E2_4124 at 4803.371 kb on - strand, within Pf6N2E2_4124 at 4803.371 kb on - strand, within Pf6N2E2_4124 at 4803.469 kb on + strand, within Pf6N2E2_4124 at 4803.469 kb on + strand, within Pf6N2E2_4124 at 4803.469 kb on + strand, within Pf6N2E2_4124 at 4803.469 kb on + strand, within Pf6N2E2_4124 at 4803.469 kb on + strand, within Pf6N2E2_4124 at 4803.469 kb on + strand, within Pf6N2E2_4124 at 4803.470 kb on - strand, within Pf6N2E2_4124 at 4803.470 kb on - strand, within Pf6N2E2_4124 at 4803.470 kb on - strand, within Pf6N2E2_4124 at 4803.470 kb on - strand, within Pf6N2E2_4124
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 4,800,933 + Pf6N2E2_4121 0.54 +0.2 4,800,934 - Pf6N2E2_4121 0.54 +0.8 4,800,982 - Pf6N2E2_4121 0.58 +1.9 4,802,495 - -0.0 4,802,495 - +1.5 4,802,495 - +1.2 4,802,506 - +0.0 4,802,506 - -0.0 4,802,621 - Pf6N2E2_4123 0.12 -0.6 4,803,068 - -1.6 4,803,068 - +0.1 4,803,077 - +0.4 4,803,077 - +0.9 4,803,077 - -0.2 4,803,077 - +0.7 4,803,094 - +0.7 4,803,094 - -1.0 4,803,143 - -0.9 4,803,203 - +0.6 4,803,217 - -0.2 4,803,217 - -1.0 4,803,217 - +0.5 4,803,217 - +0.4 4,803,217 - -0.6 4,803,217 - +0.0 4,803,217 - +1.0 4,803,217 - +0.4 4,803,217 - +1.0 4,803,220 - -1.2 4,803,249 - +1.5 4,803,325 + +0.9 4,803,325 + +0.0 4,803,325 + -0.7 4,803,325 + -1.7 4,803,326 - -0.8 4,803,326 - +1.2 4,803,370 + Pf6N2E2_4124 0.13 -0.6 4,803,370 + Pf6N2E2_4124 0.13 +0.6 4,803,370 + Pf6N2E2_4124 0.13 -2.0 4,803,370 + Pf6N2E2_4124 0.13 +0.1 4,803,370 + Pf6N2E2_4124 0.13 -1.0 4,803,370 + Pf6N2E2_4124 0.13 -0.0 4,803,371 - Pf6N2E2_4124 0.13 +0.2 4,803,371 - Pf6N2E2_4124 0.13 +0.4 4,803,371 - Pf6N2E2_4124 0.13 +0.3 4,803,371 - Pf6N2E2_4124 0.13 +0.4 4,803,469 + Pf6N2E2_4124 0.23 -2.3 4,803,469 + Pf6N2E2_4124 0.23 +1.6 4,803,469 + Pf6N2E2_4124 0.23 -0.8 4,803,469 + Pf6N2E2_4124 0.23 -0.2 4,803,469 + Pf6N2E2_4124 0.23 -0.0 4,803,469 + Pf6N2E2_4124 0.23 +0.5 4,803,470 - Pf6N2E2_4124 0.23 +0.5 4,803,470 - Pf6N2E2_4124 0.23 +0.6 4,803,470 - Pf6N2E2_4124 0.23 +1.6 4,803,470 - Pf6N2E2_4124 0.23 -0.9
Or see this region's nucleotide sequence