Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3289 and Pf6N2E2_3290 are separated by 10 nucleotides Pf6N2E2_3290 and Pf6N2E2_3291 are separated by 184 nucleotides Pf6N2E2_3291 and Pf6N2E2_3292 are separated by 58 nucleotides
Pf6N2E2_3289 - Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7), at 3,795,333 to 3,796,784
_3289
Pf6N2E2_3290 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 3,796,795 to 3,798,240
_3290
Pf6N2E2_3291 - Rare lipoprotein A, at 3,798,425 to 3,798,802
_3291
Pf6N2E2_3292 - K+-dependent Na+/Ca+ exchanger related-protein, at 3,798,861 to 3,799,913
_3292
Position (kb)
3796
3797
3798
3799 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3798.257 kb on - strand at 3798.257 kb on - strand at 3798.257 kb on - strand at 3798.257 kb on - strand at 3798.257 kb on - strand at 3798.262 kb on + strand at 3798.262 kb on + strand at 3798.263 kb on - strand at 3798.263 kb on - strand at 3798.325 kb on - strand at 3798.325 kb on - strand at 3798.533 kb on + strand, within Pf6N2E2_3291 at 3798.534 kb on - strand, within Pf6N2E2_3291 at 3798.534 kb on - strand, within Pf6N2E2_3291 at 3798.534 kb on - strand, within Pf6N2E2_3291 at 3798.534 kb on - strand, within Pf6N2E2_3291 at 3798.536 kb on + strand, within Pf6N2E2_3291 at 3798.537 kb on - strand, within Pf6N2E2_3291 at 3798.537 kb on - strand, within Pf6N2E2_3291 at 3798.658 kb on + strand, within Pf6N2E2_3291 at 3798.680 kb on - strand, within Pf6N2E2_3291 at 3798.698 kb on + strand, within Pf6N2E2_3291 at 3798.698 kb on + strand, within Pf6N2E2_3291 at 3798.698 kb on + strand, within Pf6N2E2_3291 at 3798.699 kb on - strand, within Pf6N2E2_3291 at 3798.699 kb on - strand, within Pf6N2E2_3291 at 3798.700 kb on + strand, within Pf6N2E2_3291 at 3798.724 kb on - strand, within Pf6N2E2_3291 at 3798.724 kb on - strand, within Pf6N2E2_3291 at 3798.756 kb on + strand, within Pf6N2E2_3291 at 3798.756 kb on + strand, within Pf6N2E2_3291 at 3798.757 kb on - strand, within Pf6N2E2_3291 at 3798.919 kb on + strand at 3798.919 kb on + strand at 3798.919 kb on + strand at 3798.920 kb on - strand at 3799.022 kb on + strand, within Pf6N2E2_3292 at 3799.022 kb on + strand, within Pf6N2E2_3292
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 3,798,257 - +1.0 3,798,257 - -1.3 3,798,257 - +2.3 3,798,257 - -0.5 3,798,257 - +1.7 3,798,262 + +1.0 3,798,262 + +1.2 3,798,263 - +1.3 3,798,263 - +0.3 3,798,325 - +0.8 3,798,325 - +0.5 3,798,533 + Pf6N2E2_3291 0.29 +2.3 3,798,534 - Pf6N2E2_3291 0.29 -0.7 3,798,534 - Pf6N2E2_3291 0.29 -0.7 3,798,534 - Pf6N2E2_3291 0.29 +0.4 3,798,534 - Pf6N2E2_3291 0.29 +0.7 3,798,536 + Pf6N2E2_3291 0.29 -2.1 3,798,537 - Pf6N2E2_3291 0.30 -1.6 3,798,537 - Pf6N2E2_3291 0.30 +0.0 3,798,658 + Pf6N2E2_3291 0.62 -0.8 3,798,680 - Pf6N2E2_3291 0.67 +0.1 3,798,698 + Pf6N2E2_3291 0.72 +0.1 3,798,698 + Pf6N2E2_3291 0.72 +0.2 3,798,698 + Pf6N2E2_3291 0.72 +0.7 3,798,699 - Pf6N2E2_3291 0.72 -0.4 3,798,699 - Pf6N2E2_3291 0.72 -2.3 3,798,700 + Pf6N2E2_3291 0.73 +0.2 3,798,724 - Pf6N2E2_3291 0.79 +0.0 3,798,724 - Pf6N2E2_3291 0.79 -0.7 3,798,756 + Pf6N2E2_3291 0.88 +1.3 3,798,756 + Pf6N2E2_3291 0.88 +0.4 3,798,757 - Pf6N2E2_3291 0.88 +0.7 3,798,919 + +1.2 3,798,919 + -0.4 3,798,919 + +1.0 3,798,920 - +0.5 3,799,022 + Pf6N2E2_3292 0.15 +0.7 3,799,022 + Pf6N2E2_3292 0.15 -2.4
Or see this region's nucleotide sequence