Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1210 and Pf6N2E2_1211 are separated by 125 nucleotides Pf6N2E2_1211 and Pf6N2E2_1212 are separated by 187 nucleotides Pf6N2E2_1212 and Pf6N2E2_1213 are separated by 79 nucleotides Pf6N2E2_1213 and Pf6N2E2_1214 are separated by 9 nucleotides Pf6N2E2_1214 and Pf6N2E2_1215 are separated by 168 nucleotides
Pf6N2E2_1210 - putative aminotransferase, at 1,416,869 to 1,418,017
_1210
Pf6N2E2_1211 - Lactoylglutathione lyase, at 1,418,143 to 1,418,547
_1211
Pf6N2E2_1212 - Oxidoreductase, short chain dehydrogenase/reductase family, at 1,418,735 to 1,419,592
_1212
Pf6N2E2_1213 - hypothetical protein, at 1,419,672 to 1,419,794
_1213
Pf6N2E2_1214 - C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS, at 1,419,804 to 1,420,304
_1214
Pf6N2E2_1215 - probable membrane protein YPO2362, at 1,420,473 to 1,421,084
_1215
Position (kb)
1418
1419
1420 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1417.752 kb on - strand, within Pf6N2E2_1210 at 1417.814 kb on + strand, within Pf6N2E2_1210 at 1417.815 kb on - strand, within Pf6N2E2_1210 at 1418.144 kb on + strand at 1418.145 kb on - strand at 1418.145 kb on - strand at 1418.217 kb on - strand, within Pf6N2E2_1211 at 1418.493 kb on - strand, within Pf6N2E2_1211 at 1418.533 kb on + strand at 1418.534 kb on - strand at 1418.534 kb on - strand at 1418.534 kb on - strand at 1418.534 kb on - strand at 1418.573 kb on + strand at 1418.574 kb on - strand at 1418.574 kb on - strand at 1418.574 kb on - strand at 1418.580 kb on - strand at 1418.644 kb on - strand at 1418.646 kb on + strand at 1418.646 kb on + strand at 1418.647 kb on - strand at 1418.647 kb on - strand at 1418.834 kb on + strand, within Pf6N2E2_1212 at 1418.834 kb on + strand, within Pf6N2E2_1212 at 1418.834 kb on + strand, within Pf6N2E2_1212 at 1419.095 kb on - strand, within Pf6N2E2_1212 at 1419.154 kb on - strand, within Pf6N2E2_1212 at 1419.175 kb on + strand, within Pf6N2E2_1212 at 1419.175 kb on + strand, within Pf6N2E2_1212 at 1419.175 kb on + strand, within Pf6N2E2_1212 at 1419.176 kb on - strand, within Pf6N2E2_1212 at 1419.305 kb on + strand, within Pf6N2E2_1212 at 1419.306 kb on - strand, within Pf6N2E2_1212 at 1419.306 kb on - strand, within Pf6N2E2_1212 at 1419.512 kb on + strand at 1419.512 kb on + strand at 1419.542 kb on + strand at 1419.542 kb on + strand at 1419.542 kb on + strand at 1419.542 kb on + strand at 1419.542 kb on + strand at 1419.543 kb on - strand at 1419.543 kb on - strand at 1419.543 kb on - strand at 1419.585 kb on + strand at 1419.586 kb on - strand at 1419.688 kb on + strand, within Pf6N2E2_1213 at 1419.688 kb on + strand, within Pf6N2E2_1213 at 1419.688 kb on + strand, within Pf6N2E2_1213 at 1419.689 kb on - strand, within Pf6N2E2_1213 at 1419.689 kb on - strand, within Pf6N2E2_1213 at 1420.157 kb on - strand, within Pf6N2E2_1214 at 1420.276 kb on + strand at 1420.277 kb on - strand at 1420.277 kb on - strand at 1420.277 kb on - strand at 1420.528 kb on + strand at 1420.528 kb on + strand at 1420.528 kb on + strand at 1420.529 kb on - strand at 1420.529 kb on - strand at 1420.529 kb on - strand at 1420.529 kb on - strand at 1420.560 kb on + strand, within Pf6N2E2_1215
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 1,417,752 - Pf6N2E2_1210 0.77 +1.0 1,417,814 + Pf6N2E2_1210 0.82 +0.6 1,417,815 - Pf6N2E2_1210 0.82 +0.3 1,418,144 + -0.6 1,418,145 - -0.2 1,418,145 - +0.2 1,418,217 - Pf6N2E2_1211 0.18 -0.2 1,418,493 - Pf6N2E2_1211 0.86 +1.1 1,418,533 + -1.9 1,418,534 - +0.7 1,418,534 - -0.4 1,418,534 - -0.2 1,418,534 - +0.3 1,418,573 + +1.4 1,418,574 - +1.4 1,418,574 - -0.9 1,418,574 - +1.4 1,418,580 - +0.2 1,418,644 - +0.6 1,418,646 + +2.1 1,418,646 + +1.4 1,418,647 - -1.9 1,418,647 - +0.1 1,418,834 + Pf6N2E2_1212 0.12 -0.2 1,418,834 + Pf6N2E2_1212 0.12 -0.8 1,418,834 + Pf6N2E2_1212 0.12 +0.9 1,419,095 - Pf6N2E2_1212 0.42 +0.2 1,419,154 - Pf6N2E2_1212 0.49 +1.0 1,419,175 + Pf6N2E2_1212 0.51 -0.5 1,419,175 + Pf6N2E2_1212 0.51 -0.6 1,419,175 + Pf6N2E2_1212 0.51 -0.6 1,419,176 - Pf6N2E2_1212 0.51 -0.1 1,419,305 + Pf6N2E2_1212 0.66 -0.3 1,419,306 - Pf6N2E2_1212 0.67 +2.0 1,419,306 - Pf6N2E2_1212 0.67 -1.1 1,419,512 + -0.7 1,419,512 + +0.6 1,419,542 + -0.4 1,419,542 + +1.2 1,419,542 + -1.3 1,419,542 + -0.6 1,419,542 + -1.3 1,419,543 - +0.8 1,419,543 - -0.6 1,419,543 - -0.0 1,419,585 + -0.5 1,419,586 - +0.8 1,419,688 + Pf6N2E2_1213 0.13 -0.2 1,419,688 + Pf6N2E2_1213 0.13 -0.7 1,419,688 + Pf6N2E2_1213 0.13 +0.5 1,419,689 - Pf6N2E2_1213 0.14 -0.0 1,419,689 - Pf6N2E2_1213 0.14 +0.0 1,420,157 - Pf6N2E2_1214 0.70 -0.6 1,420,276 + -1.6 1,420,277 - -1.9 1,420,277 - -2.6 1,420,277 - -0.5 1,420,528 + -0.2 1,420,528 + -0.2 1,420,528 + +0.4 1,420,529 - +0.7 1,420,529 - +0.3 1,420,529 - +0.4 1,420,529 - -1.2 1,420,560 + Pf6N2E2_1215 0.14 -0.3
Or see this region's nucleotide sequence