Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10310

Experiment: D-Raffinose 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose 20 mM
2,269,391	+		LRK54_RS10300	0.74	+1.3
2,269,391	+		LRK54_RS10300	0.74	+0.3
2,269,392	-		LRK54_RS10300	0.74	+1.4
2,269,392	-		LRK54_RS10300	0.74	+0.3
2,269,604	+		LRK54_RS10300	0.87	-0.5
2,269,604	+		LRK54_RS10300	0.87	+0.4
2,269,605	-		LRK54_RS10300	0.87	-0.1
2,269,605	-		LRK54_RS10300	0.87	+1.8
2,269,605	-		LRK54_RS10300	0.87	-1.0
2,269,605	-		LRK54_RS10300	0.87	-1.0
2,269,727	+				+0.9
2,269,728	-				-0.4
2,269,728	-				-1.3
2,269,728	-				-0.3
2,269,728	-				+0.4
2,269,963	+		LRK54_RS10305	0.67	-1.2
2,269,963	+		LRK54_RS10305	0.67	-1.2
2,269,964	-		LRK54_RS10305	0.67	+1.8
2,269,964	-		LRK54_RS10305	0.67	+1.5
2,269,964	-		LRK54_RS10305	0.67	-2.1
2,270,020	-		LRK54_RS10305	0.90	+0.2
2,270,141	-				-0.3
2,270,285	+				-1.5
2,270,285	+				-1.3
2,270,286	-				-1.4
2,270,286	-				-1.7
2,270,286	-				-1.5
2,270,286	-				-0.5
2,270,312	+				-1.0
2,270,312	+				+0.2
2,270,312	+				+0.8
2,270,312	+				-1.2
2,270,313	-				+0.8
2,270,313	-				-3.0
2,270,314	+				-2.4
2,270,314	+				-0.2
2,270,314	+				-3.5
2,270,314	+				-1.9
2,270,314	+				-2.0
2,270,314	+				-1.8
2,270,314	+				-2.7
2,270,314	+				-3.0
2,270,314	+				-1.3
2,270,315	-				-0.8
2,270,315	-				-3.5
2,270,315	-				-0.8
2,270,315	-				-4.1
2,270,315	-				-1.7
2,270,315	-				+0.2
2,270,315	-				-0.2
2,270,315	-				-2.8
2,270,315	-				-1.2
2,270,315	-				-0.0
2,270,315	-				-2.1
2,270,315	-				-1.7
2,270,315	-				-2.4
2,270,507	+		LRK54_RS10310	0.17	-2.0
2,270,507	+		LRK54_RS10310	0.17	+0.2
2,270,507	+		LRK54_RS10310	0.17	-3.0
2,270,507	+		LRK54_RS10310	0.17	-1.5
2,270,507	+		LRK54_RS10310	0.17	-1.3
2,270,507	+		LRK54_RS10310	0.17	+0.2
2,270,507	+		LRK54_RS10310	0.17	-0.2
2,270,507	+		LRK54_RS10310	0.17	-1.5
2,270,507	+		LRK54_RS10310	0.17	-1.8
2,270,507	+		LRK54_RS10310	0.17	+0.2
2,270,508	-		LRK54_RS10310	0.17	-2.4
2,270,508	-		LRK54_RS10310	0.17	-1.2
2,270,508	-		LRK54_RS10310	0.17	-2.4
2,270,508	-		LRK54_RS10310	0.17	-0.5
2,270,508	-		LRK54_RS10310	0.17	-0.8
2,270,579	+		LRK54_RS10310	0.21	-2.8
2,270,579	+		LRK54_RS10310	0.21	-0.9
2,270,579	+		LRK54_RS10310	0.21	-1.0
2,270,579	+		LRK54_RS10310	0.21	-2.4
2,270,579	+		LRK54_RS10310	0.21	-3.2
2,270,580	-		LRK54_RS10310	0.21	-0.2
2,270,580	-		LRK54_RS10310	0.21	-1.0
2,270,580	-		LRK54_RS10310	0.21	+0.2
2,270,756	+		LRK54_RS10310	0.31	-1.5
2,270,756	+		LRK54_RS10310	0.31	-2.5
2,270,756	+		LRK54_RS10310	0.31	-1.4
2,270,757	-		LRK54_RS10310	0.31	-3.0
2,270,757	-		LRK54_RS10310	0.31	-2.9
2,270,757	-		LRK54_RS10310	0.31	+1.8
2,270,757	-		LRK54_RS10310	0.31	-0.3
2,270,757	-		LRK54_RS10310	0.31	-2.3
2,270,757	-		LRK54_RS10310	0.31	-2.2
2,270,757	-		LRK54_RS10310	0.31	-2.7
2,270,847	-		LRK54_RS10310	0.36	-1.4
2,270,876	+		LRK54_RS10310	0.38	+0.8
2,270,876	+		LRK54_RS10310	0.38	-2.6
2,270,876	+		LRK54_RS10310	0.38	-1.0
2,270,877	-		LRK54_RS10310	0.38	-2.6
2,270,877	-		LRK54_RS10310	0.38	-1.0
2,270,877	-		LRK54_RS10310	0.38	-2.5
2,270,960	+		LRK54_RS10310	0.42	-1.0
2,270,960	+		LRK54_RS10310	0.42	-2.5
2,270,961	-		LRK54_RS10310	0.42	-0.2
2,271,161	+		LRK54_RS10310	0.53	-1.5
2,271,161	+		LRK54_RS10310	0.53	-2.5
2,271,161	+		LRK54_RS10310	0.53	-1.0
2,271,162	-		LRK54_RS10310	0.53	-2.9
2,271,162	-		LRK54_RS10310	0.53	-2.9
2,271,162	-		LRK54_RS10310	0.53	-2.9
2,271,329	+		LRK54_RS10310	0.63	-0.8
2,271,329	+		LRK54_RS10310	0.63	-0.5
2,271,329	+		LRK54_RS10310	0.63	+1.8
2,271,330	-		LRK54_RS10310	0.63	-1.0
2,271,330	-		LRK54_RS10310	0.63	-2.1
2,271,330	-		LRK54_RS10310	0.63	-2.8
2,271,330	-		LRK54_RS10310	0.63	-0.5
2,271,546	+		LRK54_RS10310	0.75	-0.8
2,271,547	-		LRK54_RS10310	0.75	-3.4
2,271,547	-		LRK54_RS10310	0.75	-1.0
2,271,794	+		LRK54_RS10310	0.89	-1.9
2,271,887	+				-1.0
2,271,887	+				-1.0
2,271,888	-				-0.5
2,271,905	+				-2.4
2,271,905	+				-2.6
2,271,905	+				+1.8
2,271,905	+				-2.1
2,271,906	-				-2.0
2,271,906	-				-3.2
2,271,906	-				-2.3
2,271,932	+				-0.5
2,271,967	+				-1.8
2,271,968	-				-0.2
2,272,141	+				-2.2
2,272,141	+				-1.3
2,272,337	+		LRK54_RS10315	0.13	+0.2
2,272,337	+		LRK54_RS10315	0.13	-2.1
2,272,337	+		LRK54_RS10315	0.13	-3.2
2,272,337	+		LRK54_RS10315	0.13	-3.0
2,272,337	+		LRK54_RS10315	0.13	-1.4
2,272,337	+		LRK54_RS10315	0.13	-2.4
2,272,337	+		LRK54_RS10315	0.13	-0.8
2,272,337	+		LRK54_RS10315	0.13	-1.9
2,272,337	+		LRK54_RS10315	0.13	+0.2
2,272,337	+		LRK54_RS10315	0.13	-3.7
2,272,337	+		LRK54_RS10315	0.13	-1.4
2,272,338	-		LRK54_RS10315	0.13	-1.0
2,272,338	-		LRK54_RS10315	0.13	-1.7
2,272,338	-		LRK54_RS10315	0.13	-0.8
2,272,338	-		LRK54_RS10315	0.13	-2.0
2,272,338	-		LRK54_RS10315	0.13	-1.4
2,272,338	-		LRK54_RS10315	0.13	-1.8
2,272,338	-		LRK54_RS10315	0.13	-0.2
2,272,338	-		LRK54_RS10315	0.13	-3.2
2,272,358	+		LRK54_RS10315	0.15	-3.6
2,272,359	-		LRK54_RS10315	0.15	-1.7
2,272,359	-		LRK54_RS10315	0.15	-1.5
2,272,463	+		LRK54_RS10315	0.25	-0.7
2,272,463	+		LRK54_RS10315	0.25	+0.2
2,272,463	+		LRK54_RS10315	0.25	-1.4
2,272,463	+		LRK54_RS10315	0.25	-3.2
2,272,464	-		LRK54_RS10315	0.25	-1.8
2,272,464	-		LRK54_RS10315	0.25	-0.7
2,272,464	-		LRK54_RS10315	0.25	-1.1
2,272,464	-		LRK54_RS10315	0.25	-1.9
2,272,464	-		LRK54_RS10315	0.25	-0.8
2,272,464	-		LRK54_RS10315	0.25	-3.0
2,272,464	-		LRK54_RS10315	0.25	-2.6
2,272,472	+		LRK54_RS10315	0.26	-1.5
2,272,472	+		LRK54_RS10315	0.26	-2.5
2,272,473	-		LRK54_RS10315	0.26	-1.5
2,272,473	-		LRK54_RS10315	0.26	-0.2
2,272,523	+		LRK54_RS10315	0.31	-0.5
2,272,523	+		LRK54_RS10315	0.31	-1.0
2,272,524	-		LRK54_RS10315	0.31	-1.9
2,272,524	-		LRK54_RS10315	0.31	-0.8
2,272,524	-		LRK54_RS10315	0.31	-2.9
2,272,565	+		LRK54_RS10315	0.36	-1.7
2,272,565	+		LRK54_RS10315	0.36	+0.2
2,272,565	+		LRK54_RS10315	0.36	-1.5
2,272,566	-		LRK54_RS10315	0.36	-1.5
2,272,566	-		LRK54_RS10315	0.36	-0.8
2,272,566	-		LRK54_RS10315	0.36	-1.4
2,272,566	-		LRK54_RS10315	0.36	-1.2
2,272,566	-		LRK54_RS10315	0.36	-0.5
2,272,566	-		LRK54_RS10315	0.36	-0.6
2,272,566	-		LRK54_RS10315	0.36	-0.2
2,272,566	-		LRK54_RS10315	0.36	-2.7
2,272,566	-		LRK54_RS10315	0.36	-2.8
2,272,566	-		LRK54_RS10315	0.36	-2.1
2,272,566	-		LRK54_RS10315	0.36	-2.7
2,272,566	-		LRK54_RS10315	0.36	-0.5
2,272,568	+		LRK54_RS10315	0.36	-2.4
2,272,568	+		LRK54_RS10315	0.36	-1.9
2,272,568	+		LRK54_RS10315	0.36	-3.2
2,272,569	-		LRK54_RS10315	0.36	-2.8
2,272,740	-		LRK54_RS10315	0.53	-2.3
2,272,820	+		LRK54_RS10315	0.61	-2.1
2,272,820	+		LRK54_RS10315	0.61	-1.8
2,272,821	-		LRK54_RS10315	0.61	-1.7
2,272,821	-		LRK54_RS10315	0.61	-2.6
2,272,821	-		LRK54_RS10315	0.61	-2.4
2,272,973	+		LRK54_RS10315	0.76	-1.8
2,272,973	+		LRK54_RS10315	0.76	-0.2
2,272,973	+		LRK54_RS10315	0.76	-2.5
2,272,973	+		LRK54_RS10315	0.76	-3.2
2,272,974	-		LRK54_RS10315	0.76	-2.0
2,272,974	-		LRK54_RS10315	0.76	-2.4
2,272,974	-		LRK54_RS10315	0.76	+0.8
2,272,974	-		LRK54_RS10315	0.76	-0.8