Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3195

Experiment: D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3194 and Ga0059261_3195 overlap by 4 nucleotidesGa0059261_3195 and Ga0059261_3196 overlap by 4 nucleotidesGa0059261_3196 and Ga0059261_3197 are separated by 17 nucleotides Ga0059261_3194: Ga0059261_3194 - O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data), at 3,328,739 to 3,329,947 _3194 Ga0059261_3195: Ga0059261_3195 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 3,329,944 to 3,330,342 _3195 Ga0059261_3196: Ga0059261_3196 - Transcriptional regulator, at 3,330,339 to 3,331,133 _3196 Ga0059261_3197: Ga0059261_3197 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,331,151 to 3,331,672 _3197 Position (kb) 3329 3330 3331Strain fitness (log2 ratio) -1 0 1at 3328.975 kb on + strand, within Ga0059261_3194at 3329.122 kb on + strand, within Ga0059261_3194at 3329.122 kb on + strand, within Ga0059261_3194at 3329.206 kb on + strand, within Ga0059261_3194at 3329.206 kb on + strand, within Ga0059261_3194at 3329.207 kb on - strand, within Ga0059261_3194at 3329.207 kb on - strand, within Ga0059261_3194at 3329.207 kb on - strand, within Ga0059261_3194at 3329.451 kb on - strand, within Ga0059261_3194at 3329.517 kb on + strandat 3329.518 kb on - strand, within Ga0059261_3194at 3329.518 kb on - strand, within Ga0059261_3194at 3329.518 kb on - strand, within Ga0059261_3194at 3329.713 kb on + strand, within Ga0059261_3194at 3329.714 kb on - strand, within Ga0059261_3194at 3329.750 kb on - strand, within Ga0059261_3194at 3329.750 kb on - strand, within Ga0059261_3194at 3329.768 kb on - strand, within Ga0059261_3194at 3329.768 kb on - strand, within Ga0059261_3194at 3330.007 kb on + strand, within Ga0059261_3195at 3330.007 kb on + strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.008 kb on - strand, within Ga0059261_3195at 3330.055 kb on + strand, within Ga0059261_3195at 3330.055 kb on + strand, within Ga0059261_3195at 3330.055 kb on + strand, within Ga0059261_3195at 3330.056 kb on - strand, within Ga0059261_3195at 3330.202 kb on + strand, within Ga0059261_3195at 3330.203 kb on - strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strandat 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.208 kb on + strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.209 kb on - strand, within Ga0059261_3195at 3330.259 kb on + strand, within Ga0059261_3195at 3330.259 kb on + strand, within Ga0059261_3195at 3330.260 kb on - strand, within Ga0059261_3195at 3330.260 kb on - strand, within Ga0059261_3195at 3330.317 kb on + strandat 3330.318 kb on - strandat 3330.863 kb on + strand, within Ga0059261_3196at 3330.864 kb on - strand, within Ga0059261_3196at 3330.864 kb on - strand, within Ga0059261_3196at 3330.864 kb on - strand, within Ga0059261_3196at 3331.250 kb on + strand, within Ga0059261_3197at 3331.251 kb on - strand, within Ga0059261_3197

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.064 mg/ml
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3,328,975 + Ga0059261_3194 0.20 -0.8
3,329,122 + Ga0059261_3194 0.32 +0.4
3,329,122 + Ga0059261_3194 0.32 -0.4
3,329,206 + Ga0059261_3194 0.39 +0.9
3,329,206 + Ga0059261_3194 0.39 +0.6
3,329,207 - Ga0059261_3194 0.39 +0.6
3,329,207 - Ga0059261_3194 0.39 +0.3
3,329,207 - Ga0059261_3194 0.39 +0.7
3,329,451 - Ga0059261_3194 0.59 -0.1
3,329,517 + -1.0
3,329,518 - Ga0059261_3194 0.64 +0.4
3,329,518 - Ga0059261_3194 0.64 +1.0
3,329,518 - Ga0059261_3194 0.64 +0.5
3,329,713 + Ga0059261_3194 0.81 -0.0
3,329,714 - Ga0059261_3194 0.81 +0.7
3,329,750 - Ga0059261_3194 0.84 -0.2
3,329,750 - Ga0059261_3194 0.84 +0.3
3,329,768 - Ga0059261_3194 0.85 -1.1
3,329,768 - Ga0059261_3194 0.85 +0.6
3,330,007 + Ga0059261_3195 0.16 +0.0
3,330,007 + Ga0059261_3195 0.16 +0.3
3,330,008 - Ga0059261_3195 0.16 +0.5
3,330,008 - Ga0059261_3195 0.16 +0.6
3,330,008 - Ga0059261_3195 0.16 +0.6
3,330,008 - Ga0059261_3195 0.16 +0.0
3,330,055 + Ga0059261_3195 0.28 +0.1
3,330,055 + Ga0059261_3195 0.28 +0.3
3,330,055 + Ga0059261_3195 0.28 +0.3
3,330,056 - Ga0059261_3195 0.28 +0.4
3,330,202 + Ga0059261_3195 0.65 +0.4
3,330,203 - Ga0059261_3195 0.65 +0.5
3,330,208 + Ga0059261_3195 0.66 +0.9
3,330,208 + +1.6
3,330,208 + Ga0059261_3195 0.66 +0.1
3,330,208 + Ga0059261_3195 0.66 +0.5
3,330,208 + Ga0059261_3195 0.66 +0.0
3,330,208 + Ga0059261_3195 0.66 +0.4
3,330,208 + Ga0059261_3195 0.66 +1.2
3,330,208 + Ga0059261_3195 0.66 +1.0
3,330,208 + Ga0059261_3195 0.66 +0.0
3,330,209 - Ga0059261_3195 0.66 -0.7
3,330,209 - Ga0059261_3195 0.66 -0.4
3,330,209 - Ga0059261_3195 0.66 +0.1
3,330,209 - Ga0059261_3195 0.66 +0.4
3,330,209 - Ga0059261_3195 0.66 +0.0
3,330,209 - Ga0059261_3195 0.66 +0.4
3,330,209 - Ga0059261_3195 0.66 +0.3
3,330,209 - Ga0059261_3195 0.66 -0.7
3,330,209 - Ga0059261_3195 0.66 +0.5
3,330,209 - Ga0059261_3195 0.66 -0.2
3,330,209 - Ga0059261_3195 0.66 -0.4
3,330,209 - Ga0059261_3195 0.66 -0.0
3,330,209 - Ga0059261_3195 0.66 +0.8
3,330,259 + Ga0059261_3195 0.79 +0.8
3,330,259 + Ga0059261_3195 0.79 +0.3
3,330,260 - Ga0059261_3195 0.79 +1.0
3,330,260 - Ga0059261_3195 0.79 -1.4
3,330,317 + +0.4
3,330,318 - -0.2
3,330,863 + Ga0059261_3196 0.66 +0.0
3,330,864 - Ga0059261_3196 0.66 +0.2
3,330,864 - Ga0059261_3196 0.66 -0.2
3,330,864 - Ga0059261_3196 0.66 -0.3
3,331,250 + Ga0059261_3197 0.19 +0.3
3,331,251 - Ga0059261_3197 0.19 +0.5

Or see this region's nucleotide sequence