Experiment: D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2123 and Ga0059261_2124 are separated by 39 nucleotides Ga0059261_2124 and Ga0059261_2125 are separated by 90 nucleotides
Ga0059261_2123: Ga0059261_2123 - Geranylgeranyl pyrophosphate synthase, at 2,237,474 to 2,238,487
_2123
Ga0059261_2124: Ga0059261_2124 - hypothetical protein, at 2,238,527 to 2,238,739
_2124
Ga0059261_2125: Ga0059261_2125 - ATP-dependent helicase HrpB, at 2,238,830 to 2,241,286
_2125
Position (kb)
2238
2239 Strain fitness (log2 ratio)
-1
0
1
2 at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.529 kb on - strand at 2238.529 kb on - strand at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.618 kb on - strand, within Ga0059261_2124 at 2238.618 kb on - strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.687 kb on + strand, within Ga0059261_2124 at 2238.687 kb on + strand, within Ga0059261_2124 at 2238.688 kb on - strand, within Ga0059261_2124 at 2238.688 kb on - strand, within Ga0059261_2124 at 2238.818 kb on + strand at 2238.819 kb on - strand at 2238.819 kb on - strand at 2238.901 kb on - strand at 2239.716 kb on - strand, within Ga0059261_2125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.064 mg/ml remove 2,238,528 + +0.8 2,238,528 + +0.2 2,238,528 + +1.3 2,238,528 + +0.6 2,238,529 - +1.2 2,238,529 - +2.0 2,238,617 + Ga0059261_2124 0.42 +0.5 2,238,617 + Ga0059261_2124 0.42 -0.3 2,238,617 + Ga0059261_2124 0.42 +2.4 2,238,617 + Ga0059261_2124 0.42 +0.5 2,238,617 + Ga0059261_2124 0.42 +1.6 2,238,617 + Ga0059261_2124 0.42 -0.9 2,238,618 - Ga0059261_2124 0.43 +1.6 2,238,618 - Ga0059261_2124 0.43 +1.6 2,238,633 + Ga0059261_2124 0.50 +0.7 2,238,633 + Ga0059261_2124 0.50 +0.6 2,238,633 + Ga0059261_2124 0.50 +2.2 2,238,633 + Ga0059261_2124 0.50 +1.1 2,238,633 + Ga0059261_2124 0.50 +0.0 2,238,633 + Ga0059261_2124 0.50 +0.6 2,238,633 + Ga0059261_2124 0.50 -0.5 2,238,633 + Ga0059261_2124 0.50 +0.8 2,238,634 - Ga0059261_2124 0.50 +1.5 2,238,634 - Ga0059261_2124 0.50 +1.5 2,238,634 - Ga0059261_2124 0.50 +1.0 2,238,634 - Ga0059261_2124 0.50 -0.4 2,238,634 - Ga0059261_2124 0.50 +1.7 2,238,634 - Ga0059261_2124 0.50 +1.6 2,238,687 + Ga0059261_2124 0.75 +0.7 2,238,687 + Ga0059261_2124 0.75 -0.4 2,238,688 - Ga0059261_2124 0.76 +0.6 2,238,688 - Ga0059261_2124 0.76 +2.1 2,238,818 + +1.1 2,238,819 - +1.1 2,238,819 - +1.6 2,238,901 - +1.1 2,239,716 - Ga0059261_2125 0.36 +1.5
Or see this region's nucleotide sequence