Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1035

Experiment: D-Cycloserine 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1033 and Ga0059261_1034 overlap by 4 nucleotidesGa0059261_1034 and Ga0059261_1035 overlap by 4 nucleotidesGa0059261_1035 and Ga0059261_1036 are separated by 3 nucleotidesGa0059261_1036 and Ga0059261_1037 are separated by 56 nucleotides Ga0059261_1033: Ga0059261_1033 - pseudouridine synthase, RluA family, at 1,070,706 to 1,071,851 _1033 Ga0059261_1034: Ga0059261_1034 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 1,071,848 to 1,072,507 _1034 Ga0059261_1035: Ga0059261_1035 - hypothetical protein, at 1,072,504 to 1,072,725 _1035 Ga0059261_1036: Ga0059261_1036 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 1,072,729 to 1,073,418 _1036 Ga0059261_1037: Ga0059261_1037 - hypothetical protein, at 1,073,475 to 1,074,065 _1037 Position (kb) 1072 1073Strain fitness (log2 ratio) -1 0 1at 1071.904 kb on + strandat 1071.904 kb on + strandat 1071.904 kb on + strandat 1071.905 kb on - strandat 1071.905 kb on - strandat 1071.905 kb on - strandat 1071.905 kb on - strandat 1072.061 kb on + strand, within Ga0059261_1034at 1072.061 kb on + strand, within Ga0059261_1034at 1072.061 kb on + strand, within Ga0059261_1034at 1072.061 kb on + strand, within Ga0059261_1034at 1072.061 kb on + strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.062 kb on - strand, within Ga0059261_1034at 1072.063 kb on + strand, within Ga0059261_1034at 1072.063 kb on + strand, within Ga0059261_1034at 1072.063 kb on + strand, within Ga0059261_1034at 1072.063 kb on + strand, within Ga0059261_1034at 1072.063 kb on + strand, within Ga0059261_1034at 1072.063 kb on + strand, within Ga0059261_1034at 1072.064 kb on - strand, within Ga0059261_1034at 1072.064 kb on - strandat 1072.064 kb on - strand, within Ga0059261_1034at 1072.064 kb on - strand, within Ga0059261_1034at 1072.064 kb on - strand, within Ga0059261_1034at 1072.064 kb on - strand, within Ga0059261_1034at 1072.064 kb on - strand, within Ga0059261_1034at 1072.127 kb on - strand, within Ga0059261_1034at 1072.503 kb on + strandat 1072.531 kb on + strand, within Ga0059261_1035at 1072.657 kb on + strandat 1072.657 kb on + strand, within Ga0059261_1035at 1072.657 kb on + strand, within Ga0059261_1035at 1072.710 kb on + strandat 1072.723 kb on + strandat 1073.417 kb on - strandat 1073.417 kb on - strandat 1073.593 kb on + strand, within Ga0059261_1037at 1073.593 kb on + strand, within Ga0059261_1037at 1073.593 kb on + strand, within Ga0059261_1037at 1073.593 kb on + strand, within Ga0059261_1037at 1073.594 kb on - strand, within Ga0059261_1037at 1073.594 kb on - strand, within Ga0059261_1037at 1073.594 kb on - strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.603 kb on - strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.064 mg/ml
remove
1,071,904 + -0.4
1,071,904 + -0.1
1,071,904 + -1.7
1,071,905 - -0.2
1,071,905 - -1.0
1,071,905 - +0.2
1,071,905 - +0.0
1,072,061 + Ga0059261_1034 0.32 -0.1
1,072,061 + Ga0059261_1034 0.32 +0.5
1,072,061 + Ga0059261_1034 0.32 +0.4
1,072,061 + Ga0059261_1034 0.32 -0.0
1,072,061 + Ga0059261_1034 0.32 -0.3
1,072,062 - Ga0059261_1034 0.32 -0.7
1,072,062 - Ga0059261_1034 0.32 +0.3
1,072,062 - Ga0059261_1034 0.32 -0.1
1,072,062 - Ga0059261_1034 0.32 +0.9
1,072,062 - Ga0059261_1034 0.32 -0.1
1,072,062 - Ga0059261_1034 0.32 +0.1
1,072,062 - Ga0059261_1034 0.32 +1.0
1,072,062 - Ga0059261_1034 0.32 -1.4
1,072,062 - Ga0059261_1034 0.32 -0.1
1,072,063 + Ga0059261_1034 0.33 +0.0
1,072,063 + Ga0059261_1034 0.33 +0.8
1,072,063 + Ga0059261_1034 0.33 +0.6
1,072,063 + Ga0059261_1034 0.33 +0.5
1,072,063 + Ga0059261_1034 0.33 +0.2
1,072,063 + Ga0059261_1034 0.33 +1.0
1,072,064 - Ga0059261_1034 0.33 -0.1
1,072,064 - +0.0
1,072,064 - Ga0059261_1034 0.33 -0.1
1,072,064 - Ga0059261_1034 0.33 -0.1
1,072,064 - Ga0059261_1034 0.33 -0.4
1,072,064 - Ga0059261_1034 0.33 -0.6
1,072,064 - Ga0059261_1034 0.33 +0.0
1,072,127 - Ga0059261_1034 0.42 +0.4
1,072,503 + +0.4
1,072,531 + Ga0059261_1035 0.12 +0.9
1,072,657 + -0.4
1,072,657 + Ga0059261_1035 0.69 +0.3
1,072,657 + Ga0059261_1035 0.69 -0.0
1,072,710 + -0.1
1,072,723 + -1.3
1,073,417 - +0.8
1,073,417 - -0.4
1,073,593 + Ga0059261_1037 0.20 -0.1
1,073,593 + Ga0059261_1037 0.20 +0.4
1,073,593 + Ga0059261_1037 0.20 -0.6
1,073,593 + Ga0059261_1037 0.20 +0.2
1,073,594 - Ga0059261_1037 0.20 -0.1
1,073,594 - Ga0059261_1037 0.20 -0.3
1,073,594 - Ga0059261_1037 0.20 -0.5
1,073,602 + Ga0059261_1037 0.21 -0.6
1,073,602 + Ga0059261_1037 0.21 +0.6
1,073,602 + Ga0059261_1037 0.21 +0.4
1,073,602 + Ga0059261_1037 0.21 +0.3
1,073,602 + Ga0059261_1037 0.21 -0.1
1,073,603 - Ga0059261_1037 0.22 +0.5
1,073,647 + Ga0059261_1037 0.29 -0.3
1,073,647 + Ga0059261_1037 0.29 -0.1
1,073,647 + Ga0059261_1037 0.29 +0.0
1,073,647 + Ga0059261_1037 0.29 -0.1
1,073,647 + Ga0059261_1037 0.29 -0.2
1,073,647 + Ga0059261_1037 0.29 +0.0
1,073,647 + Ga0059261_1037 0.29 -0.0
1,073,648 - Ga0059261_1037 0.29 -0.1
1,073,648 - Ga0059261_1037 0.29 -0.5
1,073,648 - Ga0059261_1037 0.29 -0.2
1,073,648 - Ga0059261_1037 0.29 -0.3

Or see this region's nucleotide sequence