Experiment: D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0541 and Ga0059261_0542 are separated by 86 nucleotides Ga0059261_0542 and Ga0059261_0543 overlap by 4 nucleotides
Ga0059261_0541: Ga0059261_0541 - Outer membrane receptor proteins, mostly Fe transport, at 547,003 to 549,501
_0541
Ga0059261_0542: Ga0059261_0542 - type I secretion membrane fusion protein, HlyD family, at 549,588 to 550,799
_0542
Ga0059261_0543: Ga0059261_0543 - type I secretion system ATPase, LssB family, at 550,796 to 552,961
_0543
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1
2 at 548.599 kb on + strand, within Ga0059261_0541 at 548.600 kb on - strand, within Ga0059261_0541 at 548.600 kb on - strand, within Ga0059261_0541 at 548.600 kb on - strand, within Ga0059261_0541 at 548.600 kb on - strand, within Ga0059261_0541 at 548.600 kb on - strand, within Ga0059261_0541 at 548.616 kb on + strand, within Ga0059261_0541 at 548.616 kb on + strand, within Ga0059261_0541 at 548.616 kb on + strand, within Ga0059261_0541 at 548.617 kb on - strand at 548.726 kb on - strand, within Ga0059261_0541 at 548.770 kb on + strand, within Ga0059261_0541 at 548.770 kb on + strand, within Ga0059261_0541 at 548.770 kb on + strand, within Ga0059261_0541 at 548.771 kb on - strand, within Ga0059261_0541 at 548.771 kb on - strand, within Ga0059261_0541 at 548.833 kb on + strand, within Ga0059261_0541 at 548.833 kb on + strand, within Ga0059261_0541 at 548.833 kb on + strand, within Ga0059261_0541 at 548.834 kb on - strand, within Ga0059261_0541 at 548.851 kb on + strand, within Ga0059261_0541 at 548.851 kb on + strand, within Ga0059261_0541 at 548.852 kb on - strand, within Ga0059261_0541 at 548.857 kb on + strand, within Ga0059261_0541 at 548.857 kb on + strand, within Ga0059261_0541 at 548.858 kb on - strand, within Ga0059261_0541 at 548.858 kb on - strand, within Ga0059261_0541 at 548.858 kb on - strand, within Ga0059261_0541 at 548.858 kb on - strand, within Ga0059261_0541 at 548.858 kb on - strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.914 kb on + strand, within Ga0059261_0541 at 548.915 kb on - strand, within Ga0059261_0541 at 548.915 kb on - strand at 548.915 kb on - strand, within Ga0059261_0541 at 548.915 kb on - strand, within Ga0059261_0541 at 548.915 kb on - strand, within Ga0059261_0541 at 548.915 kb on - strand, within Ga0059261_0541 at 548.916 kb on + strand, within Ga0059261_0541 at 548.916 kb on + strand, within Ga0059261_0541 at 548.916 kb on + strand, within Ga0059261_0541 at 548.916 kb on + strand, within Ga0059261_0541 at 548.916 kb on + strand, within Ga0059261_0541 at 548.917 kb on - strand, within Ga0059261_0541 at 548.917 kb on - strand, within Ga0059261_0541 at 548.917 kb on - strand, within Ga0059261_0541 at 548.997 kb on + strand, within Ga0059261_0541 at 548.997 kb on + strand, within Ga0059261_0541 at 548.997 kb on + strand, within Ga0059261_0541 at 548.997 kb on + strand, within Ga0059261_0541 at 548.997 kb on + strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 548.998 kb on - strand, within Ga0059261_0541 at 549.001 kb on + strand, within Ga0059261_0541 at 549.001 kb on + strand, within Ga0059261_0541 at 549.001 kb on + strand, within Ga0059261_0541 at 549.001 kb on + strand at 549.001 kb on + strand, within Ga0059261_0541 at 549.001 kb on + strand, within Ga0059261_0541 at 549.002 kb on - strand, within Ga0059261_0541 at 549.002 kb on - strand, within Ga0059261_0541 at 549.002 kb on - strand, within Ga0059261_0541 at 549.066 kb on + strand, within Ga0059261_0541 at 549.067 kb on - strand, within Ga0059261_0541 at 549.196 kb on + strand, within Ga0059261_0541 at 549.196 kb on + strand, within Ga0059261_0541 at 549.196 kb on + strand, within Ga0059261_0541 at 549.226 kb on + strand, within Ga0059261_0541 at 549.226 kb on + strand, within Ga0059261_0541 at 549.227 kb on - strand, within Ga0059261_0541 at 549.227 kb on - strand, within Ga0059261_0541 at 549.227 kb on - strand, within Ga0059261_0541 at 549.247 kb on + strand, within Ga0059261_0541 at 549.314 kb on - strand at 549.314 kb on - strand at 549.314 kb on - strand at 549.314 kb on - strand at 549.314 kb on - strand at 549.314 kb on - strand at 549.340 kb on + strand at 549.341 kb on - strand at 549.355 kb on + strand at 549.355 kb on + strand at 549.355 kb on + strand at 549.355 kb on + strand at 549.357 kb on + strand at 549.357 kb on + strand at 549.357 kb on + strand at 549.357 kb on + strand at 549.357 kb on + strand at 549.358 kb on - strand at 549.358 kb on - strand at 549.358 kb on - strand at 549.358 kb on - strand at 549.381 kb on + strand at 549.382 kb on - strand at 549.382 kb on - strand at 549.382 kb on - strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.445 kb on + strand at 549.446 kb on - strand at 549.446 kb on - strand at 549.447 kb on + strand at 549.447 kb on + strand at 549.448 kb on - strand at 549.468 kb on + strand at 549.468 kb on + strand at 549.468 kb on + strand at 549.468 kb on + strand at 549.468 kb on + strand at 549.469 kb on - strand at 549.469 kb on - strand at 549.500 kb on - strand at 549.500 kb on - strand at 549.500 kb on - strand at 549.500 kb on - strand at 549.590 kb on - strand at 549.590 kb on - strand at 549.590 kb on - strand at 549.590 kb on - strand at 549.637 kb on + strand at 549.637 kb on + strand at 549.638 kb on - strand at 549.638 kb on - strand at 549.645 kb on + strand at 549.646 kb on - strand at 549.646 kb on - strand at 549.646 kb on - strand at 549.722 kb on + strand, within Ga0059261_0542 at 549.723 kb on - strand, within Ga0059261_0542 at 549.761 kb on - strand, within Ga0059261_0542 at 549.763 kb on + strand, within Ga0059261_0542 at 549.763 kb on + strand, within Ga0059261_0542 at 549.763 kb on + strand, within Ga0059261_0542 at 549.763 kb on + strand, within Ga0059261_0542 at 549.763 kb on + strand, within Ga0059261_0542 at 549.764 kb on - strand, within Ga0059261_0542 at 549.764 kb on - strand, within Ga0059261_0542 at 549.764 kb on - strand, within Ga0059261_0542 at 549.797 kb on + strand, within Ga0059261_0542 at 549.838 kb on + strand, within Ga0059261_0542 at 549.838 kb on + strand, within Ga0059261_0542 at 549.853 kb on + strand at 549.853 kb on + strand, within Ga0059261_0542 at 549.854 kb on - strand, within Ga0059261_0542 at 549.854 kb on - strand, within Ga0059261_0542 at 549.854 kb on - strand, within Ga0059261_0542 at 549.854 kb on - strand, within Ga0059261_0542 at 550.120 kb on + strand, within Ga0059261_0542 at 550.120 kb on + strand, within Ga0059261_0542 at 550.121 kb on - strand, within Ga0059261_0542 at 550.121 kb on - strand, within Ga0059261_0542 at 550.397 kb on + strand, within Ga0059261_0542 at 550.398 kb on - strand, within Ga0059261_0542 at 550.398 kb on - strand, within Ga0059261_0542 at 550.398 kb on - strand, within Ga0059261_0542 at 550.398 kb on - strand, within Ga0059261_0542 at 550.607 kb on + strand, within Ga0059261_0542 at 550.608 kb on - strand, within Ga0059261_0542 at 550.644 kb on - strand, within Ga0059261_0542 at 550.652 kb on - strand, within Ga0059261_0542 at 550.652 kb on - strand at 550.652 kb on - strand at 550.738 kb on + strand at 550.738 kb on + strand at 550.738 kb on + strand at 550.738 kb on + strand at 550.739 kb on - strand at 550.739 kb on - strand at 550.984 kb on + strand at 551.056 kb on + strand, within Ga0059261_0543 at 551.057 kb on - strand, within Ga0059261_0543 at 551.057 kb on - strand, within Ga0059261_0543 at 551.292 kb on + strand, within Ga0059261_0543 at 551.293 kb on - strand, within Ga0059261_0543 at 551.293 kb on - strand, within Ga0059261_0543 at 551.293 kb on - strand, within Ga0059261_0543 at 551.293 kb on - strand, within Ga0059261_0543 at 551.502 kb on + strand, within Ga0059261_0543 at 551.502 kb on + strand, within Ga0059261_0543 at 551.503 kb on - strand, within Ga0059261_0543 at 551.503 kb on - strand, within Ga0059261_0543 at 551.503 kb on - strand, within Ga0059261_0543 at 551.529 kb on + strand, within Ga0059261_0543 at 551.529 kb on + strand, within Ga0059261_0543 at 551.529 kb on + strand, within Ga0059261_0543 at 551.530 kb on - strand, within Ga0059261_0543 at 551.530 kb on - strand, within Ga0059261_0543 at 551.530 kb on - strand, within Ga0059261_0543 at 551.530 kb on - strand, within Ga0059261_0543 at 551.530 kb on - strand, within Ga0059261_0543 at 551.770 kb on + strand at 551.770 kb on + strand, within Ga0059261_0543 at 551.770 kb on + strand, within Ga0059261_0543 at 551.770 kb on + strand, within Ga0059261_0543 at 551.770 kb on + strand, within Ga0059261_0543 at 551.770 kb on + strand, within Ga0059261_0543 at 551.770 kb on + strand, within Ga0059261_0543 at 551.771 kb on - strand, within Ga0059261_0543 at 551.771 kb on - strand, within Ga0059261_0543 at 551.772 kb on + strand, within Ga0059261_0543 at 551.772 kb on + strand at 551.773 kb on - strand, within Ga0059261_0543 at 551.773 kb on - strand, within Ga0059261_0543 at 551.773 kb on - strand, within Ga0059261_0543
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.064 mg/ml remove 548,599 + Ga0059261_0541 0.64 +0.7 548,600 - Ga0059261_0541 0.64 +0.5 548,600 - Ga0059261_0541 0.64 +1.1 548,600 - Ga0059261_0541 0.64 -0.1 548,600 - Ga0059261_0541 0.64 -0.7 548,600 - Ga0059261_0541 0.64 -0.3 548,616 + Ga0059261_0541 0.65 -0.8 548,616 + Ga0059261_0541 0.65 -0.1 548,616 + Ga0059261_0541 0.65 -0.7 548,617 - +0.6 548,726 - Ga0059261_0541 0.69 -0.2 548,770 + Ga0059261_0541 0.71 +0.4 548,770 + Ga0059261_0541 0.71 +0.4 548,770 + Ga0059261_0541 0.71 +0.3 548,771 - Ga0059261_0541 0.71 -0.8 548,771 - Ga0059261_0541 0.71 +0.6 548,833 + Ga0059261_0541 0.73 -0.4 548,833 + Ga0059261_0541 0.73 +0.3 548,833 + Ga0059261_0541 0.73 +0.6 548,834 - Ga0059261_0541 0.73 +0.2 548,851 + Ga0059261_0541 0.74 -1.0 548,851 + Ga0059261_0541 0.74 +0.9 548,852 - Ga0059261_0541 0.74 -1.0 548,857 + Ga0059261_0541 0.74 +0.2 548,857 + Ga0059261_0541 0.74 -0.5 548,858 - Ga0059261_0541 0.74 -0.6 548,858 - Ga0059261_0541 0.74 +0.0 548,858 - Ga0059261_0541 0.74 +0.8 548,858 - Ga0059261_0541 0.74 +0.3 548,858 - Ga0059261_0541 0.74 +0.3 548,914 + Ga0059261_0541 0.76 -1.0 548,914 + Ga0059261_0541 0.76 +1.0 548,914 + Ga0059261_0541 0.76 -0.5 548,914 + Ga0059261_0541 0.76 -0.1 548,914 + Ga0059261_0541 0.76 -0.4 548,914 + Ga0059261_0541 0.76 +1.5 548,914 + Ga0059261_0541 0.76 -0.4 548,915 - Ga0059261_0541 0.77 -0.5 548,915 - -0.7 548,915 - Ga0059261_0541 0.77 +0.2 548,915 - Ga0059261_0541 0.77 +0.0 548,915 - Ga0059261_0541 0.77 -0.7 548,915 - Ga0059261_0541 0.77 +0.3 548,916 + Ga0059261_0541 0.77 +1.1 548,916 + Ga0059261_0541 0.77 -0.1 548,916 + Ga0059261_0541 0.77 -0.4 548,916 + Ga0059261_0541 0.77 -0.7 548,916 + Ga0059261_0541 0.77 +0.4 548,917 - Ga0059261_0541 0.77 -0.3 548,917 - Ga0059261_0541 0.77 -0.6 548,917 - Ga0059261_0541 0.77 -0.1 548,997 + Ga0059261_0541 0.80 +0.6 548,997 + Ga0059261_0541 0.80 +0.1 548,997 + Ga0059261_0541 0.80 -0.4 548,997 + Ga0059261_0541 0.80 +0.4 548,997 + Ga0059261_0541 0.80 -0.3 548,998 - Ga0059261_0541 0.80 +0.6 548,998 - Ga0059261_0541 0.80 +0.6 548,998 - Ga0059261_0541 0.80 -0.7 548,998 - Ga0059261_0541 0.80 +0.0 548,998 - Ga0059261_0541 0.80 -0.6 548,998 - Ga0059261_0541 0.80 -0.7 548,998 - Ga0059261_0541 0.80 -0.2 548,998 - Ga0059261_0541 0.80 +0.0 548,998 - Ga0059261_0541 0.80 +0.0 548,998 - Ga0059261_0541 0.80 -1.0 549,001 + Ga0059261_0541 0.80 +0.7 549,001 + Ga0059261_0541 0.80 -0.7 549,001 + Ga0059261_0541 0.80 -0.5 549,001 + -0.4 549,001 + Ga0059261_0541 0.80 +0.5 549,001 + Ga0059261_0541 0.80 +0.5 549,002 - Ga0059261_0541 0.80 -0.9 549,002 - Ga0059261_0541 0.80 +1.0 549,002 - Ga0059261_0541 0.80 -1.2 549,066 + Ga0059261_0541 0.83 +0.3 549,067 - Ga0059261_0541 0.83 -0.4 549,196 + Ga0059261_0541 0.88 -0.3 549,196 + Ga0059261_0541 0.88 -0.3 549,196 + Ga0059261_0541 0.88 +0.1 549,226 + Ga0059261_0541 0.89 +0.6 549,226 + Ga0059261_0541 0.89 -0.8 549,227 - Ga0059261_0541 0.89 +0.0 549,227 - Ga0059261_0541 0.89 +1.0 549,227 - Ga0059261_0541 0.89 -0.5 549,247 + Ga0059261_0541 0.90 -0.5 549,314 - +0.2 549,314 - +0.7 549,314 - -0.1 549,314 - +0.2 549,314 - +0.1 549,314 - -0.3 549,340 + -0.2 549,341 - -0.4 549,355 + +0.1 549,355 + +0.2 549,355 + +0.4 549,355 + -0.1 549,357 + -0.1 549,357 + +0.4 549,357 + +0.6 549,357 + +0.8 549,357 + -0.9 549,358 - -0.0 549,358 - -0.6 549,358 - +1.6 549,358 - -0.4 549,381 + -0.3 549,382 - +0.4 549,382 - +1.0 549,382 - -0.1 549,445 + -0.2 549,445 + +0.2 549,445 + +0.5 549,445 + -0.6 549,445 + +1.2 549,445 + +0.0 549,445 + +0.7 549,445 + +0.0 549,445 + +0.4 549,445 + +0.6 549,445 + -1.7 549,446 - -0.3 549,446 - +0.2 549,447 + +0.1 549,447 + +1.1 549,448 - -0.8 549,468 + -0.5 549,468 + +0.0 549,468 + +0.1 549,468 + -0.3 549,468 + +0.3 549,469 - +0.3 549,469 - +0.4 549,500 - -0.8 549,500 - +0.9 549,500 - +0.9 549,500 - -0.2 549,590 - +0.3 549,590 - -0.3 549,590 - -0.2 549,590 - +0.4 549,637 + +0.6 549,637 + +0.9 549,638 - +0.5 549,638 - +0.5 549,645 + +0.2 549,646 - +1.0 549,646 - +0.4 549,646 - +0.7 549,722 + Ga0059261_0542 0.11 -0.3 549,723 - Ga0059261_0542 0.11 +0.0 549,761 - Ga0059261_0542 0.14 -0.2 549,763 + Ga0059261_0542 0.14 -0.0 549,763 + Ga0059261_0542 0.14 +0.0 549,763 + Ga0059261_0542 0.14 -0.2 549,763 + Ga0059261_0542 0.14 -0.4 549,763 + Ga0059261_0542 0.14 -0.2 549,764 - Ga0059261_0542 0.15 +0.2 549,764 - Ga0059261_0542 0.15 -1.3 549,764 - Ga0059261_0542 0.15 -2.0 549,797 + Ga0059261_0542 0.17 -0.5 549,838 + Ga0059261_0542 0.21 +0.3 549,838 + Ga0059261_0542 0.21 -0.4 549,853 + +2.2 549,853 + Ga0059261_0542 0.22 +0.1 549,854 - Ga0059261_0542 0.22 -0.1 549,854 - Ga0059261_0542 0.22 +0.4 549,854 - Ga0059261_0542 0.22 +0.8 549,854 - Ga0059261_0542 0.22 +1.2 550,120 + Ga0059261_0542 0.44 -0.1 550,120 + Ga0059261_0542 0.44 +0.4 550,121 - Ga0059261_0542 0.44 -0.5 550,121 - Ga0059261_0542 0.44 -0.1 550,397 + Ga0059261_0542 0.67 -0.0 550,398 - Ga0059261_0542 0.67 +0.6 550,398 - Ga0059261_0542 0.67 -1.4 550,398 - Ga0059261_0542 0.67 -0.2 550,398 - Ga0059261_0542 0.67 -0.1 550,607 + Ga0059261_0542 0.84 -1.0 550,608 - Ga0059261_0542 0.84 +0.6 550,644 - Ga0059261_0542 0.87 -0.6 550,652 - Ga0059261_0542 0.88 -0.2 550,652 - +0.4 550,652 - -0.4 550,738 + -1.7 550,738 + +0.8 550,738 + -0.5 550,738 + +0.2 550,739 - +0.0 550,739 - -0.8 550,984 + -0.6 551,056 + Ga0059261_0543 0.12 +0.0 551,057 - Ga0059261_0543 0.12 -0.2 551,057 - Ga0059261_0543 0.12 -0.6 551,292 + Ga0059261_0543 0.23 +0.6 551,293 - Ga0059261_0543 0.23 +0.8 551,293 - Ga0059261_0543 0.23 -0.1 551,293 - Ga0059261_0543 0.23 +1.3 551,293 - Ga0059261_0543 0.23 -0.0 551,502 + Ga0059261_0543 0.33 +0.0 551,502 + Ga0059261_0543 0.33 -0.5 551,503 - Ga0059261_0543 0.33 -0.0 551,503 - Ga0059261_0543 0.33 -0.2 551,503 - Ga0059261_0543 0.33 -0.1 551,529 + Ga0059261_0543 0.34 -0.1 551,529 + Ga0059261_0543 0.34 +1.2 551,529 + Ga0059261_0543 0.34 +0.4 551,530 - Ga0059261_0543 0.34 +0.2 551,530 - Ga0059261_0543 0.34 +0.2 551,530 - Ga0059261_0543 0.34 -0.5 551,530 - Ga0059261_0543 0.34 -0.1 551,530 - Ga0059261_0543 0.34 +0.2 551,770 + +0.0 551,770 + Ga0059261_0543 0.45 +0.3 551,770 + Ga0059261_0543 0.45 +0.2 551,770 + Ga0059261_0543 0.45 +0.1 551,770 + Ga0059261_0543 0.45 +0.0 551,770 + Ga0059261_0543 0.45 -0.2 551,770 + Ga0059261_0543 0.45 +0.6 551,771 - Ga0059261_0543 0.45 -1.4 551,771 - Ga0059261_0543 0.45 -0.1 551,772 + Ga0059261_0543 0.45 +0.1 551,772 + +0.6 551,773 - Ga0059261_0543 0.45 +0.6 551,773 - Ga0059261_0543 0.45 +0.2 551,773 - Ga0059261_0543 0.45 +0.3
Or see this region's nucleotide sequence