Experiment: LB_Aerobic_60MIN_ZN2B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19050 and CSW01_19055 are separated by 182 nucleotides CSW01_19055 and CSW01_19060 are separated by 357 nucleotides
CSW01_19050: CSW01_19050 - phosphoenolpyruvate synthase, at 936,272 to 938,683
_19050
CSW01_19055: CSW01_19055 - chemotaxis protein, at 938,866 to 940,422
_19055
CSW01_19060: CSW01_19060 - MATE family efflux transporter, at 940,780 to 942,114
_19060
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.878 kb on - strand, within CSW01_19050 at 937.952 kb on - strand, within CSW01_19050 at 937.976 kb on - strand, within CSW01_19050 at 937.985 kb on + strand, within CSW01_19050 at 938.062 kb on - strand, within CSW01_19050 at 938.163 kb on + strand, within CSW01_19050 at 938.163 kb on + strand, within CSW01_19050 at 938.163 kb on + strand, within CSW01_19050 at 938.163 kb on + strand, within CSW01_19050 at 938.250 kb on + strand, within CSW01_19050 at 938.255 kb on + strand, within CSW01_19050 at 938.255 kb on + strand, within CSW01_19050 at 938.263 kb on - strand, within CSW01_19050 at 938.427 kb on + strand, within CSW01_19050 at 938.427 kb on + strand, within CSW01_19050 at 938.484 kb on - strand at 938.588 kb on - strand at 938.621 kb on - strand at 938.637 kb on + strand at 938.660 kb on - strand at 938.677 kb on + strand at 938.690 kb on - strand at 938.758 kb on + strand at 938.828 kb on + strand at 938.835 kb on - strand at 938.848 kb on + strand at 938.906 kb on + strand at 938.909 kb on - strand at 938.981 kb on - strand at 938.996 kb on + strand at 939.019 kb on + strand at 939.068 kb on - strand, within CSW01_19055 at 939.088 kb on - strand, within CSW01_19055 at 939.089 kb on - strand, within CSW01_19055 at 939.148 kb on + strand, within CSW01_19055 at 939.269 kb on - strand, within CSW01_19055 at 939.316 kb on - strand, within CSW01_19055 at 939.320 kb on + strand, within CSW01_19055 at 939.320 kb on + strand, within CSW01_19055 at 939.396 kb on - strand, within CSW01_19055 at 939.475 kb on + strand, within CSW01_19055 at 939.501 kb on + strand, within CSW01_19055 at 939.808 kb on - strand, within CSW01_19055 at 939.890 kb on - strand, within CSW01_19055 at 939.930 kb on + strand, within CSW01_19055 at 940.007 kb on + strand, within CSW01_19055 at 940.007 kb on + strand, within CSW01_19055 at 940.042 kb on + strand, within CSW01_19055 at 940.042 kb on + strand, within CSW01_19055 at 940.047 kb on + strand, within CSW01_19055 at 940.047 kb on + strand, within CSW01_19055 at 940.047 kb on + strand, within CSW01_19055 at 940.117 kb on + strand, within CSW01_19055 at 940.136 kb on + strand, within CSW01_19055 at 940.143 kb on + strand, within CSW01_19055 at 940.166 kb on + strand, within CSW01_19055 at 940.279 kb on + strand at 940.325 kb on + strand at 940.333 kb on - strand at 940.410 kb on - strand at 940.424 kb on - strand at 940.455 kb on + strand at 940.505 kb on - strand at 940.520 kb on - strand at 940.591 kb on + strand at 940.640 kb on - strand at 940.646 kb on - strand at 940.690 kb on - strand at 940.737 kb on - strand at 940.766 kb on - strand at 940.835 kb on + strand at 940.862 kb on - strand at 940.868 kb on + strand at 940.869 kb on - strand at 940.910 kb on - strand at 940.910 kb on - strand at 940.924 kb on + strand, within CSW01_19060 at 940.930 kb on + strand, within CSW01_19060 at 940.984 kb on - strand, within CSW01_19060 at 941.052 kb on - strand, within CSW01_19060 at 941.122 kb on + strand, within CSW01_19060 at 941.142 kb on - strand, within CSW01_19060 at 941.213 kb on - strand, within CSW01_19060 at 941.226 kb on + strand, within CSW01_19060 at 941.250 kb on + strand, within CSW01_19060 at 941.289 kb on - strand, within CSW01_19060 at 941.397 kb on + strand, within CSW01_19060 at 941.402 kb on + strand, within CSW01_19060 at 941.402 kb on + strand, within CSW01_19060 at 941.416 kb on - strand, within CSW01_19060
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B remove 937,878 - CSW01_19050 0.67 -1.3 937,952 - CSW01_19050 0.70 -1.3 937,976 - CSW01_19050 0.71 -1.7 937,985 + CSW01_19050 0.71 -3.3 938,062 - CSW01_19050 0.74 +1.2 938,163 + CSW01_19050 0.78 -0.9 938,163 + CSW01_19050 0.78 +0.4 938,163 + CSW01_19050 0.78 -0.5 938,163 + CSW01_19050 0.78 +0.0 938,250 + CSW01_19050 0.82 -1.0 938,255 + CSW01_19050 0.82 -0.4 938,255 + CSW01_19050 0.82 +0.6 938,263 - CSW01_19050 0.83 +0.6 938,427 + CSW01_19050 0.89 +0.2 938,427 + CSW01_19050 0.89 +0.2 938,484 - +0.7 938,588 - -0.6 938,621 - -0.5 938,637 + +1.9 938,660 - -2.6 938,677 + -0.0 938,690 - -0.9 938,758 + +0.9 938,828 + -0.6 938,835 - -2.0 938,848 + +0.1 938,906 + -0.7 938,909 - -0.5 938,981 - -0.1 938,996 + +0.1 939,019 + +0.5 939,068 - CSW01_19055 0.13 -1.3 939,088 - CSW01_19055 0.14 +0.4 939,089 - CSW01_19055 0.14 -0.3 939,148 + CSW01_19055 0.18 +0.2 939,269 - CSW01_19055 0.26 +0.1 939,316 - CSW01_19055 0.29 +0.7 939,320 + CSW01_19055 0.29 -0.6 939,320 + CSW01_19055 0.29 -2.6 939,396 - CSW01_19055 0.34 +0.2 939,475 + CSW01_19055 0.39 -0.3 939,501 + CSW01_19055 0.41 +0.1 939,808 - CSW01_19055 0.61 -0.4 939,890 - CSW01_19055 0.66 -2.6 939,930 + CSW01_19055 0.68 +0.3 940,007 + CSW01_19055 0.73 -0.3 940,007 + CSW01_19055 0.73 +0.1 940,042 + CSW01_19055 0.76 -0.2 940,042 + CSW01_19055 0.76 -2.2 940,047 + CSW01_19055 0.76 +0.2 940,047 + CSW01_19055 0.76 -0.6 940,047 + CSW01_19055 0.76 +0.7 940,117 + CSW01_19055 0.80 -0.8 940,136 + CSW01_19055 0.82 -0.1 940,143 + CSW01_19055 0.82 +0.7 940,166 + CSW01_19055 0.83 +0.1 940,279 + -3.5 940,325 + +0.7 940,333 - +1.0 940,410 - +0.0 940,424 - +0.4 940,455 + +0.3 940,505 - +0.9 940,520 - +1.5 940,591 + -0.9 940,640 - -0.5 940,646 - -0.9 940,690 - -0.4 940,737 - +0.8 940,766 - -1.5 940,835 + -0.8 940,862 - -0.5 940,868 + -0.3 940,869 - -0.1 940,910 - +0.2 940,910 - +0.4 940,924 + CSW01_19060 0.11 +1.1 940,930 + CSW01_19060 0.11 -0.1 940,984 - CSW01_19060 0.15 +0.1 941,052 - CSW01_19060 0.20 +0.3 941,122 + CSW01_19060 0.26 -0.6 941,142 - CSW01_19060 0.27 +0.2 941,213 - CSW01_19060 0.32 -0.2 941,226 + CSW01_19060 0.33 -0.9 941,250 + CSW01_19060 0.35 +0.1 941,289 - CSW01_19060 0.38 +0.2 941,397 + CSW01_19060 0.46 -2.7 941,402 + CSW01_19060 0.47 +0.9 941,402 + CSW01_19060 0.47 +1.0 941,416 - CSW01_19060 0.48 +1.6
Or see this region's nucleotide sequence