Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17905

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17900 and CSW01_17905 are separated by 129 nucleotidesCSW01_17905 and CSW01_17910 are separated by 654 nucleotides CSW01_17900: CSW01_17900 - glycerol kinase, at 686,278 to 687,795 _17900 CSW01_17905: CSW01_17905 - aquaporin family protein, at 687,925 to 688,779 _17905 CSW01_17910: CSW01_17910 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 689,434 to 691,077 _17910 Position (kb) 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 686.977 kb on - strand, within CSW01_17900at 687.048 kb on - strand, within CSW01_17900at 687.126 kb on - strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.222 kb on + strand, within CSW01_17900at 687.230 kb on - strand, within CSW01_17900at 687.242 kb on + strand, within CSW01_17900at 687.244 kb on - strand, within CSW01_17900at 687.275 kb on - strand, within CSW01_17900at 687.331 kb on - strand, within CSW01_17900at 687.363 kb on - strand, within CSW01_17900at 687.380 kb on + strand, within CSW01_17900at 687.573 kb on + strand, within CSW01_17900at 687.615 kb on + strand, within CSW01_17900at 687.622 kb on + strand, within CSW01_17900at 687.623 kb on - strand, within CSW01_17900at 687.660 kb on - strandat 687.682 kb on - strandat 687.727 kb on + strandat 687.727 kb on + strandat 687.735 kb on - strandat 687.843 kb on + strandat 687.880 kb on - strandat 687.892 kb on - strandat 687.936 kb on + strandat 687.948 kb on + strandat 687.954 kb on - strandat 687.956 kb on - strandat 687.956 kb on - strandat 687.984 kb on - strandat 688.140 kb on + strand, within CSW01_17905at 688.165 kb on - strand, within CSW01_17905at 688.171 kb on - strand, within CSW01_17905at 688.173 kb on - strand, within CSW01_17905at 688.237 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.294 kb on + strand, within CSW01_17905at 688.302 kb on - strand, within CSW01_17905at 688.372 kb on - strand, within CSW01_17905at 688.457 kb on + strand, within CSW01_17905at 688.465 kb on - strand, within CSW01_17905at 688.513 kb on - strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.568 kb on + strand, within CSW01_17905at 688.576 kb on - strand, within CSW01_17905at 688.719 kb on - strandat 688.721 kb on + strandat 688.744 kb on - strandat 688.763 kb on - strandat 688.848 kb on - strandat 689.311 kb on + strandat 689.418 kb on + strandat 689.418 kb on + strandat 689.430 kb on + strandat 689.441 kb on - strandat 689.441 kb on - strandat 689.441 kb on - strandat 689.501 kb on - strandat 689.510 kb on + strandat 689.534 kb on + strandat 689.573 kb on - strandat 689.755 kb on + strand, within CSW01_17910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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686,977 - CSW01_17900 0.46 -0.3
687,048 - CSW01_17900 0.51 -1.7
687,126 - CSW01_17900 0.56 -0.1
687,222 + CSW01_17900 0.62 +1.2
687,222 + CSW01_17900 0.62 -0.2
687,222 + CSW01_17900 0.62 -0.2
687,230 - CSW01_17900 0.63 -3.1
687,242 + CSW01_17900 0.64 +0.3
687,244 - CSW01_17900 0.64 -0.4
687,275 - CSW01_17900 0.66 +1.1
687,331 - CSW01_17900 0.69 +1.4
687,363 - CSW01_17900 0.71 +0.0
687,380 + CSW01_17900 0.73 +3.2
687,573 + CSW01_17900 0.85 -0.9
687,615 + CSW01_17900 0.88 -1.7
687,622 + CSW01_17900 0.89 -0.4
687,623 - CSW01_17900 0.89 +1.3
687,660 - +1.6
687,682 - +0.8
687,727 + +0.3
687,727 + -0.4
687,735 - -0.6
687,843 + -2.2
687,880 - -0.4
687,892 - -2.2
687,936 + +0.9
687,948 + +0.2
687,954 - -0.2
687,956 - -0.4
687,956 - +0.5
687,984 - +2.3
688,140 + CSW01_17905 0.25 +1.1
688,165 - CSW01_17905 0.28 +1.1
688,171 - CSW01_17905 0.29 +0.4
688,173 - CSW01_17905 0.29 +0.0
688,237 + CSW01_17905 0.36 -1.0
688,294 + CSW01_17905 0.43 +1.6
688,294 + CSW01_17905 0.43 -1.4
688,294 + CSW01_17905 0.43 -2.4
688,302 - CSW01_17905 0.44 -1.0
688,372 - CSW01_17905 0.52 -0.7
688,457 + CSW01_17905 0.62 +1.2
688,465 - CSW01_17905 0.63 -0.6
688,513 - CSW01_17905 0.69 -2.6
688,568 + CSW01_17905 0.75 -1.0
688,568 + CSW01_17905 0.75 -0.3
688,576 - CSW01_17905 0.76 +0.6
688,719 - -0.9
688,721 + +3.4
688,744 - -0.4
688,763 - +1.3
688,848 - -0.9
689,311 + -2.7
689,418 + +0.4
689,418 + -1.5
689,430 + +0.2
689,441 - -2.2
689,441 - +0.7
689,441 - -0.3
689,501 - +1.7
689,510 + -0.8
689,534 + +1.4
689,573 - -0.7
689,755 + CSW01_17910 0.20 -1.0

Or see this region's nucleotide sequence