Experiment: LB_Aerobic_60MIN_ZN2B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17855 and CSW01_17860 are separated by 17 nucleotides CSW01_17860 and CSW01_17865 are separated by 211 nucleotides
CSW01_17855: CSW01_17855 - autoinducer 2 sensor kinase/phosphatase LuxQ, at 678,655 to 681,228
_17855
CSW01_17860: CSW01_17860 - autoinducer 2-binding periplasmic protein LuxP, at 681,246 to 682,340
_17860
CSW01_17865: CSW01_17865 - conjugal transfer protein TraF, at 682,552 to 683,712
_17865
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.409 kb on + strand, within CSW01_17855 at 680.419 kb on + strand, within CSW01_17855 at 680.446 kb on + strand, within CSW01_17855 at 680.492 kb on - strand, within CSW01_17855 at 680.516 kb on - strand, within CSW01_17855 at 680.523 kb on + strand, within CSW01_17855 at 680.525 kb on + strand, within CSW01_17855 at 680.528 kb on - strand, within CSW01_17855 at 680.560 kb on - strand, within CSW01_17855 at 680.569 kb on - strand, within CSW01_17855 at 680.569 kb on - strand, within CSW01_17855 at 680.592 kb on + strand, within CSW01_17855 at 680.600 kb on - strand, within CSW01_17855 at 680.608 kb on + strand, within CSW01_17855 at 680.792 kb on - strand, within CSW01_17855 at 680.996 kb on + strand at 681.074 kb on - strand at 681.076 kb on + strand at 681.086 kb on + strand at 681.157 kb on - strand at 681.195 kb on + strand at 681.203 kb on - strand at 681.239 kb on - strand at 681.339 kb on + strand at 681.483 kb on - strand, within CSW01_17860 at 681.532 kb on + strand, within CSW01_17860 at 681.563 kb on - strand, within CSW01_17860 at 681.563 kb on - strand, within CSW01_17860 at 681.594 kb on + strand, within CSW01_17860 at 681.691 kb on - strand, within CSW01_17860 at 681.719 kb on - strand, within CSW01_17860 at 681.884 kb on + strand, within CSW01_17860 at 681.894 kb on + strand, within CSW01_17860 at 681.902 kb on - strand, within CSW01_17860 at 681.902 kb on - strand, within CSW01_17860 at 682.028 kb on - strand, within CSW01_17860 at 682.060 kb on + strand, within CSW01_17860 at 682.202 kb on + strand, within CSW01_17860 at 682.275 kb on + strand at 682.301 kb on - strand at 682.489 kb on + strand at 682.497 kb on - strand at 682.695 kb on + strand, within CSW01_17865 at 682.695 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.706 kb on + strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.714 kb on - strand, within CSW01_17865 at 682.718 kb on + strand, within CSW01_17865 at 682.726 kb on - strand, within CSW01_17865 at 682.726 kb on - strand, within CSW01_17865 at 682.743 kb on - strand, within CSW01_17865 at 682.811 kb on - strand, within CSW01_17865 at 682.854 kb on - strand, within CSW01_17865 at 682.996 kb on - strand, within CSW01_17865 at 683.058 kb on - strand, within CSW01_17865 at 683.090 kb on - strand, within CSW01_17865 at 683.162 kb on - strand, within CSW01_17865 at 683.165 kb on + strand, within CSW01_17865 at 683.213 kb on - strand, within CSW01_17865 at 683.241 kb on - strand, within CSW01_17865 at 683.261 kb on - strand, within CSW01_17865 at 683.299 kb on - strand, within CSW01_17865 at 683.310 kb on + strand, within CSW01_17865
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B remove 680,409 + CSW01_17855 0.68 -0.8 680,419 + CSW01_17855 0.69 -0.2 680,446 + CSW01_17855 0.70 -0.8 680,492 - CSW01_17855 0.71 +2.2 680,516 - CSW01_17855 0.72 -1.5 680,523 + CSW01_17855 0.73 -0.8 680,525 + CSW01_17855 0.73 -0.4 680,528 - CSW01_17855 0.73 -0.3 680,560 - CSW01_17855 0.74 -0.2 680,569 - CSW01_17855 0.74 -0.1 680,569 - CSW01_17855 0.74 -1.7 680,592 + CSW01_17855 0.75 -0.2 680,600 - CSW01_17855 0.76 -0.7 680,608 + CSW01_17855 0.76 +0.2 680,792 - CSW01_17855 0.83 -1.2 680,996 + -0.2 681,074 - -1.0 681,076 + +1.7 681,086 + +0.2 681,157 - -0.6 681,195 + -3.2 681,203 - -1.0 681,239 - -1.7 681,339 + +1.2 681,483 - CSW01_17860 0.22 +1.1 681,532 + CSW01_17860 0.26 -1.7 681,563 - CSW01_17860 0.29 +1.6 681,563 - CSW01_17860 0.29 +0.3 681,594 + CSW01_17860 0.32 -0.2 681,691 - CSW01_17860 0.41 -0.5 681,719 - CSW01_17860 0.43 -0.1 681,884 + CSW01_17860 0.58 +3.6 681,894 + CSW01_17860 0.59 +0.8 681,902 - CSW01_17860 0.60 +1.4 681,902 - CSW01_17860 0.60 -0.1 682,028 - CSW01_17860 0.71 -0.8 682,060 + CSW01_17860 0.74 +0.5 682,202 + CSW01_17860 0.87 -0.0 682,275 + +0.6 682,301 - -2.0 682,489 + -1.2 682,497 - +0.8 682,695 + CSW01_17865 0.12 -0.6 682,695 + CSW01_17865 0.12 -1.6 682,706 + CSW01_17865 0.13 -1.0 682,706 + CSW01_17865 0.13 +0.2 682,706 + CSW01_17865 0.13 +2.6 682,706 + CSW01_17865 0.13 -0.2 682,706 + CSW01_17865 0.13 -1.7 682,706 + CSW01_17865 0.13 +0.6 682,706 + CSW01_17865 0.13 -0.4 682,706 + CSW01_17865 0.13 -1.7 682,706 + CSW01_17865 0.13 -0.8 682,714 - CSW01_17865 0.14 -1.4 682,714 - CSW01_17865 0.14 +1.0 682,714 - CSW01_17865 0.14 -0.4 682,714 - CSW01_17865 0.14 +1.4 682,714 - CSW01_17865 0.14 +0.1 682,714 - CSW01_17865 0.14 +0.1 682,714 - CSW01_17865 0.14 -0.2 682,714 - CSW01_17865 0.14 +0.9 682,714 - CSW01_17865 0.14 +0.8 682,718 + CSW01_17865 0.14 +1.6 682,726 - CSW01_17865 0.15 -0.9 682,726 - CSW01_17865 0.15 -1.0 682,743 - CSW01_17865 0.16 -0.9 682,811 - CSW01_17865 0.22 +0.1 682,854 - CSW01_17865 0.26 -2.0 682,996 - CSW01_17865 0.38 +0.7 683,058 - CSW01_17865 0.44 -1.9 683,090 - CSW01_17865 0.46 -0.2 683,162 - CSW01_17865 0.53 -0.4 683,165 + CSW01_17865 0.53 -1.1 683,213 - CSW01_17865 0.57 -0.4 683,241 - CSW01_17865 0.59 +2.4 683,261 - CSW01_17865 0.61 +0.1 683,299 - CSW01_17865 0.64 +0.2 683,310 + CSW01_17865 0.65 -0.2
Or see this region's nucleotide sequence