Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17695

Experiment: LB_Aerobic_60MIN_ZN2B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17690 and CSW01_17695 are separated by 78 nucleotidesCSW01_17695 and CSW01_17700 overlap by 4 nucleotides CSW01_17690: CSW01_17690 - NADH-dependent alcohol dehydrogenase, at 640,838 to 641,986 _17690 CSW01_17695: CSW01_17695 - lysoplasmalogenase, at 642,065 to 642,754 _17695 CSW01_17700: CSW01_17700 - sigma-54-dependent Fis family transcriptional regulator, at 642,751 to 644,070 _17700 Position (kb) 642 643Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 641.123 kb on + strand, within CSW01_17690at 641.141 kb on - strand, within CSW01_17690at 641.192 kb on + strand, within CSW01_17690at 641.360 kb on - strand, within CSW01_17690at 641.368 kb on + strand, within CSW01_17690at 641.431 kb on + strand, within CSW01_17690at 641.431 kb on + strand, within CSW01_17690at 641.431 kb on + strand, within CSW01_17690at 641.433 kb on + strand, within CSW01_17690at 641.439 kb on - strand, within CSW01_17690at 641.439 kb on - strand, within CSW01_17690at 641.439 kb on - strand, within CSW01_17690at 641.439 kb on - strand, within CSW01_17690at 641.439 kb on - strand, within CSW01_17690at 641.483 kb on - strand, within CSW01_17690at 641.495 kb on + strand, within CSW01_17690at 641.495 kb on + strand, within CSW01_17690at 641.495 kb on + strand, within CSW01_17690at 641.603 kb on + strand, within CSW01_17690at 641.608 kb on + strand, within CSW01_17690at 641.608 kb on + strand, within CSW01_17690at 641.611 kb on - strand, within CSW01_17690at 641.616 kb on - strand, within CSW01_17690at 641.638 kb on + strand, within CSW01_17690at 641.645 kb on + strand, within CSW01_17690at 641.689 kb on + strand, within CSW01_17690at 641.692 kb on - strand, within CSW01_17690at 641.730 kb on + strand, within CSW01_17690at 641.893 kb on - strandat 641.990 kb on - strandat 642.261 kb on + strand, within CSW01_17695at 642.269 kb on - strand, within CSW01_17695at 642.305 kb on + strand, within CSW01_17695at 642.408 kb on + strand, within CSW01_17695at 642.427 kb on - strand, within CSW01_17695at 642.429 kb on + strand, within CSW01_17695at 642.500 kb on - strand, within CSW01_17695at 642.500 kb on - strand, within CSW01_17695at 642.564 kb on + strand, within CSW01_17695at 642.571 kb on + strand, within CSW01_17695at 642.571 kb on + strand, within CSW01_17695at 642.579 kb on - strand, within CSW01_17695at 642.584 kb on - strand, within CSW01_17695at 642.597 kb on - strand, within CSW01_17695at 642.613 kb on + strand, within CSW01_17695at 642.635 kb on - strand, within CSW01_17695at 642.719 kb on + strandat 642.728 kb on + strandat 642.833 kb on - strandat 642.833 kb on - strandat 642.919 kb on - strand, within CSW01_17700at 643.001 kb on + strand, within CSW01_17700at 643.009 kb on - strand, within CSW01_17700at 643.009 kb on - strand, within CSW01_17700at 643.070 kb on + strand, within CSW01_17700at 643.075 kb on + strand, within CSW01_17700at 643.092 kb on + strand, within CSW01_17700at 643.100 kb on - strand, within CSW01_17700at 643.100 kb on - strand, within CSW01_17700at 643.298 kb on + strand, within CSW01_17700at 643.306 kb on + strand, within CSW01_17700at 643.326 kb on - strand, within CSW01_17700at 643.349 kb on - strand, within CSW01_17700at 643.378 kb on + strand, within CSW01_17700at 643.386 kb on - strand, within CSW01_17700at 643.431 kb on + strand, within CSW01_17700at 643.431 kb on + strand, within CSW01_17700at 643.441 kb on + strand, within CSW01_17700at 643.449 kb on - strand, within CSW01_17700at 643.656 kb on + strand, within CSW01_17700at 643.729 kb on + strand, within CSW01_17700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
remove
641,123 + CSW01_17690 0.25 +0.0
641,141 - CSW01_17690 0.26 -0.5
641,192 + CSW01_17690 0.31 -1.7
641,360 - CSW01_17690 0.45 -1.6
641,368 + CSW01_17690 0.46 -0.1
641,431 + CSW01_17690 0.52 -1.2
641,431 + CSW01_17690 0.52 +1.4
641,431 + CSW01_17690 0.52 -0.8
641,433 + CSW01_17690 0.52 +1.0
641,439 - CSW01_17690 0.52 -1.4
641,439 - CSW01_17690 0.52 -0.7
641,439 - CSW01_17690 0.52 +0.0
641,439 - CSW01_17690 0.52 -1.4
641,439 - CSW01_17690 0.52 +0.6
641,483 - CSW01_17690 0.56 +2.9
641,495 + CSW01_17690 0.57 -0.4
641,495 + CSW01_17690 0.57 -0.1
641,495 + CSW01_17690 0.57 -0.1
641,603 + CSW01_17690 0.67 -0.9
641,608 + CSW01_17690 0.67 -0.3
641,608 + CSW01_17690 0.67 +0.0
641,611 - CSW01_17690 0.67 -0.9
641,616 - CSW01_17690 0.68 -0.1
641,638 + CSW01_17690 0.70 +0.6
641,645 + CSW01_17690 0.70 -2.6
641,689 + CSW01_17690 0.74 +0.8
641,692 - CSW01_17690 0.74 -0.1
641,730 + CSW01_17690 0.78 -0.5
641,893 - +0.3
641,990 - -0.3
642,261 + CSW01_17695 0.28 -0.6
642,269 - CSW01_17695 0.30 +0.4
642,305 + CSW01_17695 0.35 +0.3
642,408 + CSW01_17695 0.50 -0.2
642,427 - CSW01_17695 0.52 +0.0
642,429 + CSW01_17695 0.53 +0.7
642,500 - CSW01_17695 0.63 -2.3
642,500 - CSW01_17695 0.63 -0.4
642,564 + CSW01_17695 0.72 -0.9
642,571 + CSW01_17695 0.73 +0.2
642,571 + CSW01_17695 0.73 +0.8
642,579 - CSW01_17695 0.74 +4.4
642,584 - CSW01_17695 0.75 +1.2
642,597 - CSW01_17695 0.77 +0.5
642,613 + CSW01_17695 0.79 +0.8
642,635 - CSW01_17695 0.83 -0.2
642,719 + -0.2
642,728 + +0.3
642,833 - -0.7
642,833 - -0.5
642,919 - CSW01_17700 0.13 +0.1
643,001 + CSW01_17700 0.19 -1.0
643,009 - CSW01_17700 0.20 -1.6
643,009 - CSW01_17700 0.20 -1.4
643,070 + CSW01_17700 0.24 +1.4
643,075 + CSW01_17700 0.25 -0.4
643,092 + CSW01_17700 0.26 -0.7
643,100 - CSW01_17700 0.26 -0.3
643,100 - CSW01_17700 0.26 +0.0
643,298 + CSW01_17700 0.41 -1.7
643,306 + CSW01_17700 0.42 -1.1
643,326 - CSW01_17700 0.44 +0.2
643,349 - CSW01_17700 0.45 -0.6
643,378 + CSW01_17700 0.47 -0.2
643,386 - CSW01_17700 0.48 +1.1
643,431 + CSW01_17700 0.52 +0.8
643,431 + CSW01_17700 0.52 +0.8
643,441 + CSW01_17700 0.52 -0.3
643,449 - CSW01_17700 0.53 -1.7
643,656 + CSW01_17700 0.69 +0.2
643,729 + CSW01_17700 0.74 -0.4

Or see this region's nucleotide sequence