Experiment: LB_Aerobic_60MIN_ZN2B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17555 and CSW01_17560 are separated by 50 nucleotides CSW01_17560 and CSW01_17565 overlap by 11 nucleotides
CSW01_17555: CSW01_17555 - LacI family transcriptional regulator, at 606,280 to 607,311
_17555
CSW01_17560: CSW01_17560 - DNA-binding response regulator, at 607,362 to 607,988
_17560
CSW01_17565: CSW01_17565 - nitrate/nitrite two-component system sensor histidine kinase NarQ, at 607,978 to 609,729
_17565
Position (kb) 607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.476 kb on + strand, within CSW01_17555 at 606.482 kb on + strand, within CSW01_17555 at 606.520 kb on + strand, within CSW01_17555 at 606.595 kb on + strand, within CSW01_17555 at 606.619 kb on + strand, within CSW01_17555 at 606.795 kb on + strand, within CSW01_17555 at 606.795 kb on + strand, within CSW01_17555 at 606.825 kb on - strand, within CSW01_17555 at 606.954 kb on - strand, within CSW01_17555 at 607.042 kb on + strand, within CSW01_17555 at 607.050 kb on - strand, within CSW01_17555 at 607.063 kb on + strand, within CSW01_17555 at 607.117 kb on - strand, within CSW01_17555 at 607.117 kb on - strand, within CSW01_17555 at 607.157 kb on + strand, within CSW01_17555 at 607.157 kb on + strand, within CSW01_17555 at 607.165 kb on - strand, within CSW01_17555 at 607.243 kb on + strand at 607.267 kb on - strand at 607.285 kb on - strand at 607.368 kb on - strand at 607.507 kb on + strand, within CSW01_17560 at 607.525 kb on - strand, within CSW01_17560 at 607.552 kb on - strand, within CSW01_17560 at 607.561 kb on + strand, within CSW01_17560 at 607.636 kb on + strand, within CSW01_17560 at 607.663 kb on + strand, within CSW01_17560 at 607.731 kb on + strand, within CSW01_17560 at 607.731 kb on + strand, within CSW01_17560 at 607.731 kb on + strand, within CSW01_17560 at 607.731 kb on + strand, within CSW01_17560 at 607.739 kb on - strand, within CSW01_17560 at 607.739 kb on - strand, within CSW01_17560 at 607.767 kb on - strand, within CSW01_17560 at 607.769 kb on + strand, within CSW01_17560 at 607.777 kb on - strand, within CSW01_17560 at 607.792 kb on - strand, within CSW01_17560 at 607.879 kb on - strand, within CSW01_17560 at 608.035 kb on - strand at 608.057 kb on + strand at 608.182 kb on + strand, within CSW01_17565 at 608.185 kb on - strand, within CSW01_17565 at 608.185 kb on - strand, within CSW01_17565 at 608.224 kb on - strand, within CSW01_17565 at 608.335 kb on + strand, within CSW01_17565 at 608.419 kb on - strand, within CSW01_17565 at 608.419 kb on - strand, within CSW01_17565 at 608.441 kb on - strand, within CSW01_17565 at 608.633 kb on + strand, within CSW01_17565 at 608.633 kb on + strand, within CSW01_17565 at 608.641 kb on - strand, within CSW01_17565 at 608.829 kb on - strand, within CSW01_17565 at 608.876 kb on + strand, within CSW01_17565 at 608.961 kb on - strand, within CSW01_17565
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B remove 606,476 + CSW01_17555 0.19 -0.2 606,482 + CSW01_17555 0.20 -0.6 606,520 + CSW01_17555 0.23 +0.1 606,595 + CSW01_17555 0.31 +0.6 606,619 + CSW01_17555 0.33 +0.5 606,795 + CSW01_17555 0.50 +1.2 606,795 + CSW01_17555 0.50 +0.0 606,825 - CSW01_17555 0.53 -0.1 606,954 - CSW01_17555 0.65 -0.6 607,042 + CSW01_17555 0.74 -0.3 607,050 - CSW01_17555 0.75 +1.8 607,063 + CSW01_17555 0.76 +1.2 607,117 - CSW01_17555 0.81 +0.1 607,117 - CSW01_17555 0.81 +2.4 607,157 + CSW01_17555 0.85 +0.0 607,157 + CSW01_17555 0.85 +0.2 607,165 - CSW01_17555 0.86 -2.1 607,243 + -0.2 607,267 - -0.9 607,285 - -0.1 607,368 - -0.4 607,507 + CSW01_17560 0.23 -0.3 607,525 - CSW01_17560 0.26 +0.5 607,552 - CSW01_17560 0.30 -0.7 607,561 + CSW01_17560 0.32 +1.7 607,636 + CSW01_17560 0.44 +1.2 607,663 + CSW01_17560 0.48 +0.2 607,731 + CSW01_17560 0.59 +0.4 607,731 + CSW01_17560 0.59 +0.6 607,731 + CSW01_17560 0.59 +0.2 607,731 + CSW01_17560 0.59 +1.5 607,739 - CSW01_17560 0.60 -0.9 607,739 - CSW01_17560 0.60 -0.9 607,767 - CSW01_17560 0.65 -1.5 607,769 + CSW01_17560 0.65 +0.6 607,777 - CSW01_17560 0.66 +0.1 607,792 - CSW01_17560 0.69 +0.4 607,879 - CSW01_17560 0.82 +0.8 608,035 - +0.1 608,057 + +0.7 608,182 + CSW01_17565 0.12 -0.6 608,185 - CSW01_17565 0.12 -0.7 608,185 - CSW01_17565 0.12 -0.3 608,224 - CSW01_17565 0.14 -0.0 608,335 + CSW01_17565 0.20 -0.8 608,419 - CSW01_17565 0.25 -0.9 608,419 - CSW01_17565 0.25 +0.1 608,441 - CSW01_17565 0.26 +0.7 608,633 + CSW01_17565 0.37 +2.5 608,633 + CSW01_17565 0.37 -0.4 608,641 - CSW01_17565 0.38 -1.2 608,829 - CSW01_17565 0.49 +0.4 608,876 + CSW01_17565 0.51 +0.4 608,961 - CSW01_17565 0.56 +0.3
Or see this region's nucleotide sequence