Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17190

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17185 and CSW01_17190 are separated by 195 nucleotidesCSW01_17190 and CSW01_17195 are separated by 53 nucleotides CSW01_17185: CSW01_17185 - ABC transporter substrate-binding protein, at 526,746 to 528,581 _17185 CSW01_17190: CSW01_17190 - DNA mismatch repair protein MutT, at 528,777 to 529,337 _17190 CSW01_17195: CSW01_17195 - exopolyphosphatase, at 529,391 to 530,323 _17195 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 527.870 kb on + strand, within CSW01_17185at 527.917 kb on + strand, within CSW01_17185at 528.124 kb on + strand, within CSW01_17185at 528.134 kb on + strand, within CSW01_17185at 528.147 kb on + strand, within CSW01_17185at 528.156 kb on - strand, within CSW01_17185at 528.556 kb on - strandat 528.566 kb on - strandat 528.566 kb on - strandat 528.666 kb on - strandat 528.801 kb on + strandat 528.828 kb on + strandat 528.828 kb on + strandat 528.828 kb on + strandat 528.848 kb on - strand, within CSW01_17190at 528.865 kb on - strand, within CSW01_17190at 528.865 kb on - strand, within CSW01_17190at 528.904 kb on + strand, within CSW01_17190at 528.913 kb on + strand, within CSW01_17190at 529.053 kb on + strand, within CSW01_17190at 529.055 kb on + strand, within CSW01_17190at 529.113 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.203 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.318 kb on + strandat 529.318 kb on + strandat 529.326 kb on - strandat 529.326 kb on - strandat 529.336 kb on - strandat 529.401 kb on + strandat 529.415 kb on + strandat 529.479 kb on + strandat 529.497 kb on - strand, within CSW01_17195at 529.634 kb on + strand, within CSW01_17195at 529.702 kb on + strand, within CSW01_17195at 529.710 kb on - strand, within CSW01_17195at 529.710 kb on - strand, within CSW01_17195at 529.751 kb on + strand, within CSW01_17195at 529.756 kb on + strand, within CSW01_17195at 529.756 kb on + strand, within CSW01_17195at 529.759 kb on - strand, within CSW01_17195at 529.872 kb on + strand, within CSW01_17195at 529.881 kb on - strand, within CSW01_17195at 530.057 kb on - strand, within CSW01_17195at 530.161 kb on - strand, within CSW01_17195at 530.226 kb on - strand, within CSW01_17195at 530.250 kb on - strandat 530.260 kb on + strandat 530.260 kb on + strandat 530.268 kb on - strandat 530.268 kb on - strandat 530.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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527,870 + CSW01_17185 0.61 +0.4
527,917 + CSW01_17185 0.64 +0.2
528,124 + CSW01_17185 0.75 +0.8
528,134 + CSW01_17185 0.76 -1.4
528,147 + CSW01_17185 0.76 +1.2
528,156 - CSW01_17185 0.77 +1.6
528,556 - -0.2
528,566 - -0.2
528,566 - +1.0
528,666 - +1.0
528,801 + -0.3
528,828 + -0.5
528,828 + -1.1
528,828 + +0.4
528,848 - CSW01_17190 0.13 -0.0
528,865 - CSW01_17190 0.16 +0.3
528,865 - CSW01_17190 0.16 -1.4
528,904 + CSW01_17190 0.23 +0.4
528,913 + CSW01_17190 0.24 +0.7
529,053 + CSW01_17190 0.49 -0.1
529,055 + CSW01_17190 0.50 -2.6
529,113 + CSW01_17190 0.60 -0.4
529,177 + CSW01_17190 0.71 -0.1
529,177 + CSW01_17190 0.71 +0.7
529,177 + CSW01_17190 0.71 +0.1
529,177 + CSW01_17190 0.71 -1.7
529,177 + CSW01_17190 0.71 -1.0
529,177 + CSW01_17190 0.71 -0.2
529,177 + CSW01_17190 0.71 +1.0
529,177 + CSW01_17190 0.71 -1.0
529,185 - CSW01_17190 0.73 -1.1
529,185 - CSW01_17190 0.73 +0.5
529,185 - CSW01_17190 0.73 +1.3
529,185 - CSW01_17190 0.73 -0.3
529,185 - CSW01_17190 0.73 -2.9
529,203 + CSW01_17190 0.76 -0.3
529,225 + CSW01_17190 0.80 -1.5
529,225 + CSW01_17190 0.80 -0.5
529,225 + CSW01_17190 0.80 +1.2
529,225 + CSW01_17190 0.80 +1.3
529,225 + CSW01_17190 0.80 +0.3
529,233 - CSW01_17190 0.81 -0.9
529,233 - CSW01_17190 0.81 +0.5
529,233 - CSW01_17190 0.81 -1.1
529,233 - CSW01_17190 0.81 -1.0
529,233 - CSW01_17190 0.81 -1.0
529,318 + +0.2
529,318 + -1.7
529,326 - -0.1
529,326 - -2.2
529,336 - +0.3
529,401 + -2.3
529,415 + +0.1
529,479 + +2.6
529,497 - CSW01_17195 0.11 -0.5
529,634 + CSW01_17195 0.26 -1.1
529,702 + CSW01_17195 0.33 -0.5
529,710 - CSW01_17195 0.34 +0.2
529,710 - CSW01_17195 0.34 +0.1
529,751 + CSW01_17195 0.39 +0.4
529,756 + CSW01_17195 0.39 -0.2
529,756 + CSW01_17195 0.39 +0.6
529,759 - CSW01_17195 0.39 -0.7
529,872 + CSW01_17195 0.52 +0.4
529,881 - CSW01_17195 0.53 +0.3
530,057 - CSW01_17195 0.71 -0.3
530,161 - CSW01_17195 0.83 -1.5
530,226 - CSW01_17195 0.89 +0.1
530,250 - +0.1
530,260 + +1.2
530,260 + +0.2
530,268 - -0.5
530,268 - +0.1
530,332 - -1.0

Or see this region's nucleotide sequence