Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16810

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16800 and CSW01_16805 are separated by 4 nucleotidesCSW01_16805 and CSW01_16810 are separated by 121 nucleotidesCSW01_16810 and CSW01_16815 are separated by 57 nucleotidesCSW01_16815 and CSW01_16820 are separated by 233 nucleotides CSW01_16800: CSW01_16800 - anaerobic ribonucleoside-triphosphate reductase, at 438,472 to 440,592 _16800 CSW01_16805: CSW01_16805 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 440,597 to 441,064 _16805 CSW01_16810: CSW01_16810 - aspartate/tyrosine/aromatic aminotransferase, at 441,186 to 442,367 _16810 CSW01_16815: CSW01_16815 - ATP-dependent zinc protease, at 442,425 to 443,108 _16815 CSW01_16820: CSW01_16820 - PTS fructose transporter subunit IIBC, at 443,342 to 445,084 _16820 Position (kb) 441 442 443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 440.220 kb on - strand, within CSW01_16800at 440.222 kb on + strand, within CSW01_16800at 440.354 kb on - strand, within CSW01_16800at 440.515 kb on + strandat 440.525 kb on + strandat 440.525 kb on + strandat 440.533 kb on - strandat 440.533 kb on - strandat 440.637 kb on - strandat 440.721 kb on + strand, within CSW01_16805at 440.857 kb on - strand, within CSW01_16805at 440.869 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.920 kb on - strand, within CSW01_16805at 440.920 kb on - strand, within CSW01_16805at 441.011 kb on + strand, within CSW01_16805at 441.074 kb on - strandat 441.088 kb on - strandat 441.336 kb on - strand, within CSW01_16810at 441.394 kb on + strand, within CSW01_16810at 441.421 kb on - strand, within CSW01_16810at 441.444 kb on - strand, within CSW01_16810at 441.445 kb on + strand, within CSW01_16810at 441.580 kb on - strand, within CSW01_16810at 441.580 kb on - strand, within CSW01_16810at 441.835 kb on + strand, within CSW01_16810at 441.843 kb on - strand, within CSW01_16810at 441.882 kb on + strand, within CSW01_16810at 441.901 kb on - strand, within CSW01_16810at 441.935 kb on + strand, within CSW01_16810at 441.943 kb on - strand, within CSW01_16810at 441.994 kb on + strand, within CSW01_16810at 442.006 kb on + strand, within CSW01_16810at 442.007 kb on - strand, within CSW01_16810at 442.045 kb on + strand, within CSW01_16810at 442.063 kb on - strand, within CSW01_16810at 442.072 kb on + strand, within CSW01_16810at 442.129 kb on + strand, within CSW01_16810at 442.257 kb on - strandat 442.276 kb on - strandat 442.434 kb on + strandat 442.551 kb on + strand, within CSW01_16815at 442.595 kb on + strand, within CSW01_16815at 442.595 kb on + strand, within CSW01_16815at 442.602 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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440,220 - CSW01_16800 0.82 +1.1
440,222 + CSW01_16800 0.83 -3.1
440,354 - CSW01_16800 0.89 -0.4
440,515 + +0.0
440,525 + -0.6
440,525 + +0.2
440,533 - -0.5
440,533 - +1.3
440,637 - -0.4
440,721 + CSW01_16805 0.26 +1.0
440,857 - CSW01_16805 0.56 -0.1
440,869 + CSW01_16805 0.58 -1.2
440,912 + CSW01_16805 0.67 +0.3
440,912 + CSW01_16805 0.67 +0.9
440,912 + CSW01_16805 0.67 +0.8
440,912 + CSW01_16805 0.67 +0.6
440,912 + CSW01_16805 0.67 +1.9
440,920 - CSW01_16805 0.69 +0.6
440,920 - CSW01_16805 0.69 -0.1
441,011 + CSW01_16805 0.88 -3.2
441,074 - -1.2
441,088 - -3.7
441,336 - CSW01_16810 0.13 +0.3
441,394 + CSW01_16810 0.18 +0.0
441,421 - CSW01_16810 0.20 -1.0
441,444 - CSW01_16810 0.22 +0.9
441,445 + CSW01_16810 0.22 +0.9
441,580 - CSW01_16810 0.33 +1.4
441,580 - CSW01_16810 0.33 +0.0
441,835 + CSW01_16810 0.55 +0.7
441,843 - CSW01_16810 0.56 -1.3
441,882 + CSW01_16810 0.59 -0.3
441,901 - CSW01_16810 0.60 +0.9
441,935 + CSW01_16810 0.63 -2.7
441,943 - CSW01_16810 0.64 +0.1
441,994 + CSW01_16810 0.68 -1.7
442,006 + CSW01_16810 0.69 +0.3
442,007 - CSW01_16810 0.69 +0.2
442,045 + CSW01_16810 0.73 -4.1
442,063 - CSW01_16810 0.74 -0.1
442,072 + CSW01_16810 0.75 -0.0
442,129 + CSW01_16810 0.80 +0.0
442,257 - -0.3
442,276 - -1.7
442,434 + -0.7
442,551 + CSW01_16815 0.18 -0.1
442,595 + CSW01_16815 0.25 +0.5
442,595 + CSW01_16815 0.25 -1.3
442,602 + CSW01_16815 0.26 +0.6
442,922 + CSW01_16815 0.73 +0.2
442,922 + CSW01_16815 0.73 -0.6
442,922 + CSW01_16815 0.73 +1.2
442,922 + CSW01_16815 0.73 -0.0
442,930 - CSW01_16815 0.74 -0.4
442,930 - CSW01_16815 0.74 +0.1
442,930 - CSW01_16815 0.74 -0.1
442,930 - CSW01_16815 0.74 -2.8
443,001 + CSW01_16815 0.84 -0.6
443,001 + CSW01_16815 0.84 -0.1
443,001 + CSW01_16815 0.84 -2.4

Or see this region's nucleotide sequence