Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16405

Experiment: LB_Aerobic_60MIN_ZN2B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16390 and CSW01_16395 are separated by 135 nucleotidesCSW01_16395 and CSW01_16400 overlap by 11 nucleotidesCSW01_16400 and CSW01_16405 are separated by 264 nucleotidesCSW01_16405 and CSW01_16410 are separated by 75 nucleotides CSW01_16390: CSW01_16390 - lipocalin, at 396,826 to 397,341 _16390 CSW01_16395: CSW01_16395 - type II toxin-antitoxin system RelE/ParE family toxin, at 397,477 to 397,767 _16395 CSW01_16400: CSW01_16400 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 397,757 to 398,005 _16400 CSW01_16405: CSW01_16405 - hemagglutinin, at 398,270 to 398,461 _16405 CSW01_16410: CSW01_16410 - site-specific DNA-methyltransferase, at 398,537 to 399,229 _16410 Position (kb) 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 397.512 kb on - strand, within CSW01_16395at 397.628 kb on + strand, within CSW01_16395at 398.080 kb on - strandat 398.311 kb on + strand, within CSW01_16405at 398.326 kb on - strand, within CSW01_16405at 398.336 kb on - strand, within CSW01_16405at 398.336 kb on - strand, within CSW01_16405at 398.390 kb on + strand, within CSW01_16405at 398.499 kb on + strandat 398.507 kb on - strandat 398.611 kb on + strand, within CSW01_16410at 398.634 kb on + strand, within CSW01_16410at 398.642 kb on - strand, within CSW01_16410at 398.644 kb on + strand, within CSW01_16410at 398.644 kb on + strand, within CSW01_16410at 398.644 kb on - strand, within CSW01_16410at 398.649 kb on + strand, within CSW01_16410at 398.652 kb on - strand, within CSW01_16410at 398.652 kb on - strand, within CSW01_16410at 398.657 kb on - strand, within CSW01_16410at 398.657 kb on - strand, within CSW01_16410at 398.668 kb on - strand, within CSW01_16410at 398.706 kb on + strand, within CSW01_16410at 398.763 kb on + strand, within CSW01_16410at 398.771 kb on - strand, within CSW01_16410at 398.771 kb on - strand, within CSW01_16410at 398.785 kb on + strand, within CSW01_16410at 398.785 kb on + strand, within CSW01_16410at 398.785 kb on + strand, within CSW01_16410at 398.785 kb on + strand, within CSW01_16410at 398.786 kb on + strand, within CSW01_16410at 398.793 kb on - strand, within CSW01_16410at 398.793 kb on - strand, within CSW01_16410at 398.794 kb on - strand, within CSW01_16410at 398.795 kb on - strand, within CSW01_16410at 398.795 kb on - strand, within CSW01_16410at 398.901 kb on - strand, within CSW01_16410at 398.919 kb on - strand, within CSW01_16410at 398.994 kb on + strand, within CSW01_16410at 399.002 kb on - strand, within CSW01_16410at 399.029 kb on + strand, within CSW01_16410at 399.179 kb on + strandat 399.203 kb on - strandat 399.241 kb on - strandat 399.290 kb on + strandat 399.330 kb on + strandat 399.330 kb on + strandat 399.338 kb on - strandat 399.355 kb on - strandat 399.355 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
remove
397,512 - CSW01_16395 0.12 -0.5
397,628 + CSW01_16395 0.52 -1.2
398,080 - -0.4
398,311 + CSW01_16405 0.21 -0.1
398,326 - CSW01_16405 0.29 +0.6
398,336 - CSW01_16405 0.34 -0.9
398,336 - CSW01_16405 0.34 +0.3
398,390 + CSW01_16405 0.62 -0.7
398,499 + +0.6
398,507 - -2.1
398,611 + CSW01_16410 0.11 -0.4
398,634 + CSW01_16410 0.14 +0.6
398,642 - CSW01_16410 0.15 +0.9
398,644 + CSW01_16410 0.15 -2.9
398,644 + CSW01_16410 0.15 -0.5
398,644 - CSW01_16410 0.15 -0.3
398,649 + CSW01_16410 0.16 -1.0
398,652 - CSW01_16410 0.17 -1.4
398,652 - CSW01_16410 0.17 +0.1
398,657 - CSW01_16410 0.17 +1.0
398,657 - CSW01_16410 0.17 -0.7
398,668 - CSW01_16410 0.19 -0.5
398,706 + CSW01_16410 0.24 +1.2
398,763 + CSW01_16410 0.33 -1.1
398,771 - CSW01_16410 0.34 +0.1
398,771 - CSW01_16410 0.34 -0.3
398,785 + CSW01_16410 0.36 +2.6
398,785 + CSW01_16410 0.36 -0.2
398,785 + CSW01_16410 0.36 +0.1
398,785 + CSW01_16410 0.36 -0.3
398,786 + CSW01_16410 0.36 -0.6
398,793 - CSW01_16410 0.37 +1.5
398,793 - CSW01_16410 0.37 -2.2
398,794 - CSW01_16410 0.37 -0.4
398,795 - CSW01_16410 0.37 -0.8
398,795 - CSW01_16410 0.37 -0.2
398,901 - CSW01_16410 0.53 +0.0
398,919 - CSW01_16410 0.55 -0.1
398,994 + CSW01_16410 0.66 +0.4
399,002 - CSW01_16410 0.67 -0.8
399,029 + CSW01_16410 0.71 +0.1
399,179 + -1.2
399,203 - -0.5
399,241 - -0.2
399,290 + +1.2
399,330 + +0.7
399,330 + +0.9
399,338 - -0.1
399,355 - -0.3
399,355 - +0.8

Or see this region's nucleotide sequence