Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15070

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15065 and CSW01_15070 are separated by 120 nucleotidesCSW01_15070 and CSW01_15075 are separated by 969 nucleotides CSW01_15065: CSW01_15065 - GGDEF domain-containing protein, at 234,159 to 235,238 _15065 CSW01_15070: CSW01_15070 - thermolabile hemolysin, at 235,359 to 236,615 _15070 CSW01_15075: CSW01_15075 - hemolysin, at 237,585 to 239,810 _15075 Position (kb) 235 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 234.362 kb on + strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.482 kb on + strand, within CSW01_15065at 234.541 kb on + strand, within CSW01_15065at 234.581 kb on + strand, within CSW01_15065at 234.752 kb on - strand, within CSW01_15065at 234.779 kb on + strand, within CSW01_15065at 235.190 kb on + strandat 235.193 kb on - strandat 235.267 kb on + strandat 235.267 kb on + strandat 235.275 kb on - strandat 235.331 kb on - strandat 235.433 kb on - strandat 235.457 kb on + strandat 235.458 kb on + strandat 235.486 kb on - strand, within CSW01_15070at 235.488 kb on + strand, within CSW01_15070at 235.496 kb on - strand, within CSW01_15070at 235.496 kb on - strand, within CSW01_15070at 235.515 kb on + strand, within CSW01_15070at 235.527 kb on - strand, within CSW01_15070at 235.577 kb on + strand, within CSW01_15070at 235.601 kb on + strand, within CSW01_15070at 235.609 kb on + strand, within CSW01_15070at 235.609 kb on + strand, within CSW01_15070at 235.609 kb on - strand, within CSW01_15070at 235.610 kb on - strand, within CSW01_15070at 235.617 kb on - strand, within CSW01_15070at 235.617 kb on - strand, within CSW01_15070at 235.762 kb on + strand, within CSW01_15070at 235.798 kb on + strand, within CSW01_15070at 235.945 kb on - strand, within CSW01_15070at 235.950 kb on - strand, within CSW01_15070at 235.982 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.028 kb on + strand, within CSW01_15070at 236.053 kb on + strand, within CSW01_15070at 236.101 kb on - strand, within CSW01_15070at 236.104 kb on + strand, within CSW01_15070at 236.158 kb on - strand, within CSW01_15070at 236.159 kb on - strand, within CSW01_15070at 236.190 kb on - strand, within CSW01_15070at 236.195 kb on + strand, within CSW01_15070at 236.208 kb on + strand, within CSW01_15070at 236.216 kb on - strand, within CSW01_15070at 236.314 kb on + strand, within CSW01_15070at 236.332 kb on - strand, within CSW01_15070at 236.373 kb on + strand, within CSW01_15070at 236.373 kb on + strand, within CSW01_15070at 236.383 kb on + strand, within CSW01_15070at 236.383 kb on + strand, within CSW01_15070at 236.383 kb on + strand, within CSW01_15070at 236.415 kb on + strand, within CSW01_15070at 236.423 kb on - strand, within CSW01_15070at 236.425 kb on + strand, within CSW01_15070at 236.425 kb on + strand, within CSW01_15070at 236.425 kb on + strand, within CSW01_15070at 236.433 kb on - strand, within CSW01_15070at 236.433 kb on - strand, within CSW01_15070at 236.658 kb on - strandat 236.660 kb on + strandat 236.691 kb on - strandat 236.717 kb on + strandat 236.717 kb on + strandat 236.724 kb on + strandat 236.799 kb on - strandat 236.804 kb on - strandat 236.805 kb on + strandat 236.827 kb on + strandat 236.835 kb on - strandat 236.843 kb on + strandat 236.883 kb on - strandat 237.151 kb on + strandat 237.182 kb on + strandat 237.190 kb on + strandat 237.190 kb on + strandat 237.196 kb on + strandat 237.200 kb on + strandat 237.204 kb on - strandat 237.216 kb on + strandat 237.226 kb on - strandat 237.229 kb on + strandat 237.229 kb on + strandat 237.229 kb on + strandat 237.229 kb on + strandat 237.229 kb on + strandat 237.229 kb on + strandat 237.237 kb on - strandat 237.237 kb on - strandat 237.239 kb on - strandat 237.252 kb on + strandat 237.265 kb on - strandat 237.265 kb on - strandat 237.268 kb on - strandat 237.270 kb on - strandat 237.329 kb on - strandat 237.343 kb on - strandat 237.362 kb on - strandat 237.363 kb on + strandat 237.373 kb on + strandat 237.374 kb on + strandat 237.374 kb on + strandat 237.376 kb on - strandat 237.376 kb on - strandat 237.382 kb on - strandat 237.556 kb on - strandat 237.578 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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234,362 + CSW01_15065 0.19 -0.3
234,370 - CSW01_15065 0.20 +0.5
234,370 - CSW01_15065 0.20 -0.6
234,370 - CSW01_15065 0.20 -1.7
234,370 - CSW01_15065 0.20 -0.3
234,482 + CSW01_15065 0.30 +1.0
234,541 + CSW01_15065 0.35 -1.0
234,581 + CSW01_15065 0.39 +0.6
234,752 - CSW01_15065 0.55 -0.1
234,779 + CSW01_15065 0.57 +2.4
235,190 + -0.1
235,193 - -0.2
235,267 + -0.5
235,267 + -1.1
235,275 - +1.8
235,331 - -0.6
235,433 - -0.3
235,457 + -0.6
235,458 + -0.2
235,486 - CSW01_15070 0.10 -0.0
235,488 + CSW01_15070 0.10 -0.5
235,496 - CSW01_15070 0.11 -0.4
235,496 - CSW01_15070 0.11 +0.9
235,515 + CSW01_15070 0.12 -1.7
235,527 - CSW01_15070 0.13 -1.4
235,577 + CSW01_15070 0.17 -0.2
235,601 + CSW01_15070 0.19 +0.3
235,609 + CSW01_15070 0.20 +0.0
235,609 + CSW01_15070 0.20 -0.0
235,609 - CSW01_15070 0.20 +1.1
235,610 - CSW01_15070 0.20 +1.2
235,617 - CSW01_15070 0.21 -2.8
235,617 - CSW01_15070 0.21 -2.1
235,762 + CSW01_15070 0.32 -2.2
235,798 + CSW01_15070 0.35 -1.7
235,945 - CSW01_15070 0.47 +0.1
235,950 - CSW01_15070 0.47 +0.4
235,982 + CSW01_15070 0.50 +0.4
236,013 + CSW01_15070 0.52 +0.0
236,013 + CSW01_15070 0.52 +0.6
236,013 + CSW01_15070 0.52 +0.2
236,013 + CSW01_15070 0.52 -0.5
236,013 + CSW01_15070 0.52 -3.0
236,021 - CSW01_15070 0.53 +1.0
236,021 - CSW01_15070 0.53 -3.1
236,021 - CSW01_15070 0.53 -0.3
236,021 - CSW01_15070 0.53 -0.1
236,028 + CSW01_15070 0.53 +0.1
236,053 + CSW01_15070 0.55 -0.8
236,101 - CSW01_15070 0.59 +0.9
236,104 + CSW01_15070 0.59 +0.2
236,158 - CSW01_15070 0.64 -0.6
236,159 - CSW01_15070 0.64 +0.3
236,190 - CSW01_15070 0.66 +0.2
236,195 + CSW01_15070 0.67 +2.6
236,208 + CSW01_15070 0.68 +1.1
236,216 - CSW01_15070 0.68 -0.5
236,314 + CSW01_15070 0.76 -0.4
236,332 - CSW01_15070 0.77 -0.4
236,373 + CSW01_15070 0.81 -1.6
236,373 + CSW01_15070 0.81 -2.2
236,383 + CSW01_15070 0.81 -1.3
236,383 + CSW01_15070 0.81 -0.0
236,383 + CSW01_15070 0.81 +0.6
236,415 + CSW01_15070 0.84 -0.3
236,423 - CSW01_15070 0.85 +0.1
236,425 + CSW01_15070 0.85 +0.0
236,425 + CSW01_15070 0.85 -2.8
236,425 + CSW01_15070 0.85 -0.6
236,433 - CSW01_15070 0.85 -0.2
236,433 - CSW01_15070 0.85 -0.3
236,658 - -0.4
236,660 + -0.9
236,691 - +0.0
236,717 + +1.0
236,717 + -0.6
236,724 + +0.8
236,799 - +0.0
236,804 - +0.4
236,805 + +0.5
236,827 + -1.5
236,835 - +1.9
236,843 + +0.4
236,883 - -1.2
237,151 + -0.1
237,182 + -0.5
237,190 + +2.3
237,190 + -1.5
237,196 + +1.0
237,200 + -0.7
237,204 - -1.0
237,216 + -0.6
237,226 - +0.1
237,229 + +1.2
237,229 + -1.0
237,229 + -1.5
237,229 + +0.4
237,229 + +0.8
237,229 + -1.5
237,237 - -2.1
237,237 - -2.8
237,239 - +0.6
237,252 + -3.8
237,265 - +0.5
237,265 - +0.1
237,268 - +0.6
237,270 - -3.4
237,329 - -2.0
237,343 - +2.0
237,362 - -3.2
237,363 + -0.2
237,373 + -1.4
237,374 + -0.1
237,374 + -0.1
237,376 - +0.8
237,376 - +1.8
237,382 - +0.3
237,556 - -0.6
237,578 + +0.1

Or see this region's nucleotide sequence