Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14850

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14845 and CSW01_14850 are separated by 1 nucleotidesCSW01_14850 and CSW01_14855 overlap by 14 nucleotidesCSW01_14855 and CSW01_14860 overlap by 4 nucleotides CSW01_14845: CSW01_14845 - VWA domain-containing protein, at 187,279 to 189,219 _14845 CSW01_14850: CSW01_14850 - VWA domain-containing protein, at 189,221 to 190,177 _14850 CSW01_14855: CSW01_14855 - DUF4381 domain-containing protein, at 190,164 to 190,652 _14855 CSW01_14860: CSW01_14860 - DUF58 domain-containing protein, at 190,649 to 191,584 _14860 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 188.296 kb on + strand, within CSW01_14845at 188.296 kb on + strand, within CSW01_14845at 188.304 kb on - strand, within CSW01_14845at 188.403 kb on + strand, within CSW01_14845at 188.411 kb on - strand, within CSW01_14845at 188.437 kb on + strand, within CSW01_14845at 188.445 kb on - strand, within CSW01_14845at 188.445 kb on - strand, within CSW01_14845at 188.447 kb on + strand, within CSW01_14845at 188.455 kb on - strand, within CSW01_14845at 188.602 kb on - strand, within CSW01_14845at 188.631 kb on + strand, within CSW01_14845at 188.653 kb on + strand, within CSW01_14845at 188.695 kb on - strand, within CSW01_14845at 188.705 kb on - strand, within CSW01_14845at 188.869 kb on - strand, within CSW01_14845at 188.869 kb on - strand, within CSW01_14845at 188.971 kb on + strand, within CSW01_14845at 188.974 kb on - strand, within CSW01_14845at 189.012 kb on - strand, within CSW01_14845at 189.043 kb on - strandat 189.137 kb on - strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.225 kb on - strandat 189.259 kb on + strandat 189.259 kb on + strandat 189.259 kb on - strandat 189.345 kb on - strand, within CSW01_14850at 189.397 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.465 kb on - strand, within CSW01_14850at 189.470 kb on - strand, within CSW01_14850at 189.552 kb on + strand, within CSW01_14850at 189.562 kb on + strand, within CSW01_14850at 189.619 kb on + strand, within CSW01_14850at 189.631 kb on + strand, within CSW01_14850at 189.652 kb on + strand, within CSW01_14850at 189.706 kb on + strand, within CSW01_14850at 189.740 kb on + strand, within CSW01_14850at 189.757 kb on - strand, within CSW01_14850at 189.798 kb on + strand, within CSW01_14850at 189.806 kb on - strand, within CSW01_14850at 189.824 kb on - strand, within CSW01_14850at 189.849 kb on - strand, within CSW01_14850at 189.849 kb on - strand, within CSW01_14850at 189.916 kb on + strand, within CSW01_14850at 189.924 kb on - strand, within CSW01_14850at 189.924 kb on - strand, within CSW01_14850at 190.045 kb on + strand, within CSW01_14850at 190.062 kb on + strand, within CSW01_14850at 190.119 kb on + strandat 190.119 kb on + strandat 190.119 kb on + strandat 190.119 kb on + strandat 190.119 kb on + strandat 190.127 kb on - strandat 190.127 kb on - strandat 190.127 kb on - strandat 190.224 kb on + strand, within CSW01_14855at 190.247 kb on + strand, within CSW01_14855at 190.247 kb on + strand, within CSW01_14855at 190.274 kb on + strand, within CSW01_14855at 190.275 kb on + strand, within CSW01_14855at 190.388 kb on + strand, within CSW01_14855at 190.390 kb on + strand, within CSW01_14855at 190.577 kb on - strand, within CSW01_14855at 190.578 kb on - strand, within CSW01_14855at 190.578 kb on - strand, within CSW01_14855at 190.578 kb on - strand, within CSW01_14855at 190.605 kb on - strandat 190.607 kb on + strandat 190.615 kb on - strandat 190.615 kb on - strandat 190.615 kb on - strandat 190.615 kb on - strandat 190.845 kb on - strand, within CSW01_14860at 190.875 kb on - strand, within CSW01_14860at 190.916 kb on + strand, within CSW01_14860at 190.957 kb on - strand, within CSW01_14860at 191.012 kb on - strand, within CSW01_14860at 191.021 kb on - strand, within CSW01_14860at 191.023 kb on + strand, within CSW01_14860at 191.023 kb on + strand, within CSW01_14860at 191.040 kb on - strand, within CSW01_14860at 191.080 kb on + strand, within CSW01_14860at 191.087 kb on - strand, within CSW01_14860

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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188,296 + CSW01_14845 0.52 -1.8
188,296 + CSW01_14845 0.52 +0.7
188,304 - CSW01_14845 0.53 +0.3
188,403 + CSW01_14845 0.58 +0.1
188,411 - CSW01_14845 0.58 +1.6
188,437 + CSW01_14845 0.60 +0.6
188,445 - CSW01_14845 0.60 +0.3
188,445 - CSW01_14845 0.60 +0.2
188,447 + CSW01_14845 0.60 -0.1
188,455 - CSW01_14845 0.61 +0.2
188,602 - CSW01_14845 0.68 -0.2
188,631 + CSW01_14845 0.70 -0.5
188,653 + CSW01_14845 0.71 +0.1
188,695 - CSW01_14845 0.73 +1.2
188,705 - CSW01_14845 0.73 -0.4
188,869 - CSW01_14845 0.82 +0.4
188,869 - CSW01_14845 0.82 +0.9
188,971 + CSW01_14845 0.87 +0.2
188,974 - CSW01_14845 0.87 -0.1
189,012 - CSW01_14845 0.89 -0.8
189,043 - -2.2
189,137 - +0.9
189,180 + +0.7
189,180 + -0.3
189,180 + +0.6
189,180 + +0.6
189,180 + +0.6
189,188 - +0.5
189,188 - -0.2
189,188 - -0.2
189,188 - -0.5
189,188 - -1.0
189,188 - -1.1
189,225 - -1.8
189,259 + -0.3
189,259 + -0.5
189,259 - +0.0
189,345 - CSW01_14850 0.13 +2.9
189,397 + CSW01_14850 0.18 +1.7
189,450 + CSW01_14850 0.24 -0.6
189,450 + CSW01_14850 0.24 +0.2
189,450 + CSW01_14850 0.24 +0.8
189,450 + CSW01_14850 0.24 +0.2
189,450 + CSW01_14850 0.24 -0.5
189,450 + CSW01_14850 0.24 +0.2
189,458 - CSW01_14850 0.25 +0.6
189,458 - CSW01_14850 0.25 -0.7
189,458 - CSW01_14850 0.25 +0.5
189,458 - CSW01_14850 0.25 +1.1
189,465 - CSW01_14850 0.25 +0.3
189,470 - CSW01_14850 0.26 -0.2
189,552 + CSW01_14850 0.35 -1.1
189,562 + CSW01_14850 0.36 -0.5
189,619 + CSW01_14850 0.42 +1.5
189,631 + CSW01_14850 0.43 -0.6
189,652 + CSW01_14850 0.45 +1.8
189,706 + CSW01_14850 0.51 -0.2
189,740 + CSW01_14850 0.54 -0.2
189,757 - CSW01_14850 0.56 -0.1
189,798 + CSW01_14850 0.60 +0.2
189,806 - CSW01_14850 0.61 +0.6
189,824 - CSW01_14850 0.63 +0.4
189,849 - CSW01_14850 0.66 +0.4
189,849 - CSW01_14850 0.66 +0.3
189,916 + CSW01_14850 0.73 +0.4
189,924 - CSW01_14850 0.73 +1.4
189,924 - CSW01_14850 0.73 +0.6
190,045 + CSW01_14850 0.86 +0.2
190,062 + CSW01_14850 0.88 -1.8
190,119 + +0.9
190,119 + -0.5
190,119 + -1.0
190,119 + +0.2
190,119 + -0.2
190,127 - +0.2
190,127 - -0.5
190,127 - -2.4
190,224 + CSW01_14855 0.12 -1.7
190,247 + CSW01_14855 0.17 +1.2
190,247 + CSW01_14855 0.17 -1.2
190,274 + CSW01_14855 0.22 +0.2
190,275 + CSW01_14855 0.23 +1.8
190,388 + CSW01_14855 0.46 +0.1
190,390 + CSW01_14855 0.46 -0.2
190,577 - CSW01_14855 0.84 +0.8
190,578 - CSW01_14855 0.85 -0.9
190,578 - CSW01_14855 0.85 -0.6
190,578 - CSW01_14855 0.85 -1.1
190,605 - +0.1
190,607 + +0.8
190,615 - -1.4
190,615 - +1.4
190,615 - +0.7
190,615 - +1.8
190,845 - CSW01_14860 0.21 +0.9
190,875 - CSW01_14860 0.24 -0.4
190,916 + CSW01_14860 0.29 -0.2
190,957 - CSW01_14860 0.33 -0.2
191,012 - CSW01_14860 0.39 -0.1
191,021 - CSW01_14860 0.40 -2.0
191,023 + CSW01_14860 0.40 -0.4
191,023 + CSW01_14860 0.40 -1.5
191,040 - CSW01_14860 0.42 +0.0
191,080 + CSW01_14860 0.46 +0.7
191,087 - CSW01_14860 0.47 -0.3

Or see this region's nucleotide sequence