Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14380

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14375 and CSW01_14380 are separated by 5 nucleotidesCSW01_14380 and CSW01_14385 are separated by 4 nucleotidesCSW01_14385 and CSW01_14390 are separated by 46 nucleotides CSW01_14375: CSW01_14375 - phosphate ABC transporter permease subunit PstC, at 80,371 to 81,291 _14375 CSW01_14380: CSW01_14380 - phosphate ABC transporter, permease protein PstA, at 81,297 to 82,160 _14380 CSW01_14385: CSW01_14385 - phosphate ABC transporter ATP-binding protein, at 82,165 to 82,944 _14385 CSW01_14390: CSW01_14390 - GGDEF domain-containing protein, at 82,991 to 84,091 _14390 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 80.298 kb on + strandat 80.298 kb on + strandat 80.306 kb on - strandat 80.486 kb on + strand, within CSW01_14375at 80.597 kb on + strand, within CSW01_14375at 80.608 kb on + strand, within CSW01_14375at 80.608 kb on + strand, within CSW01_14375at 80.608 kb on + strand, within CSW01_14375at 80.610 kb on + strand, within CSW01_14375at 80.616 kb on - strand, within CSW01_14375at 80.616 kb on - strand, within CSW01_14375at 80.675 kb on - strand, within CSW01_14375at 80.755 kb on - strand, within CSW01_14375at 80.814 kb on - strand, within CSW01_14375at 80.870 kb on + strand, within CSW01_14375at 80.870 kb on + strand, within CSW01_14375at 80.870 kb on + strand, within CSW01_14375at 80.878 kb on - strand, within CSW01_14375at 80.888 kb on + strand, within CSW01_14375at 80.985 kb on + strand, within CSW01_14375at 80.985 kb on + strand, within CSW01_14375at 81.069 kb on + strand, within CSW01_14375at 81.069 kb on + strand, within CSW01_14375at 81.077 kb on - strand, within CSW01_14375at 81.124 kb on + strand, within CSW01_14375at 81.125 kb on + strand, within CSW01_14375at 81.182 kb on - strand, within CSW01_14375at 81.205 kb on + strandat 81.218 kb on + strandat 81.218 kb on + strandat 81.411 kb on + strand, within CSW01_14380at 81.623 kb on + strand, within CSW01_14380at 81.631 kb on - strand, within CSW01_14380at 81.631 kb on - strand, within CSW01_14380at 81.649 kb on - strand, within CSW01_14380at 81.759 kb on + strand, within CSW01_14380at 81.803 kb on + strand, within CSW01_14380at 81.874 kb on + strand, within CSW01_14380at 81.882 kb on - strand, within CSW01_14380at 81.882 kb on - strand, within CSW01_14380at 81.991 kb on + strand, within CSW01_14380at 82.001 kb on + strand, within CSW01_14380at 82.003 kb on + strand, within CSW01_14380at 82.009 kb on - strand, within CSW01_14380at 82.038 kb on - strand, within CSW01_14380at 82.038 kb on - strand, within CSW01_14380at 82.091 kb on - strandat 82.124 kb on + strandat 82.227 kb on + strandat 82.227 kb on + strandat 82.235 kb on - strandat 82.287 kb on - strand, within CSW01_14385at 82.291 kb on + strand, within CSW01_14385at 82.299 kb on - strand, within CSW01_14385at 82.312 kb on - strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.389 kb on + strand, within CSW01_14385at 82.416 kb on - strand, within CSW01_14385at 82.435 kb on - strand, within CSW01_14385at 82.570 kb on + strand, within CSW01_14385at 82.572 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.580 kb on - strand, within CSW01_14385at 82.582 kb on + strand, within CSW01_14385at 82.668 kb on + strand, within CSW01_14385at 82.742 kb on + strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.799 kb on + strand, within CSW01_14385at 82.856 kb on + strand, within CSW01_14385at 82.914 kb on - strandat 82.965 kb on + strandat 82.989 kb on - strandat 83.083 kb on + strandat 83.083 kb on + strandat 83.088 kb on + strandat 83.088 kb on + strandat 83.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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80,298 + +0.2
80,298 + +0.9
80,306 - -0.1
80,486 + CSW01_14375 0.12 -1.2
80,597 + CSW01_14375 0.25 -0.1
80,608 + CSW01_14375 0.26 +0.3
80,608 + CSW01_14375 0.26 -1.1
80,608 + CSW01_14375 0.26 +0.6
80,610 + CSW01_14375 0.26 +1.0
80,616 - CSW01_14375 0.27 -0.8
80,616 - CSW01_14375 0.27 +0.3
80,675 - CSW01_14375 0.33 +0.6
80,755 - CSW01_14375 0.42 -0.9
80,814 - CSW01_14375 0.48 +0.4
80,870 + CSW01_14375 0.54 +0.0
80,870 + CSW01_14375 0.54 +0.2
80,870 + CSW01_14375 0.54 +0.6
80,878 - CSW01_14375 0.55 +0.8
80,888 + CSW01_14375 0.56 +0.1
80,985 + CSW01_14375 0.67 +0.8
80,985 + CSW01_14375 0.67 +0.9
81,069 + CSW01_14375 0.76 +0.8
81,069 + CSW01_14375 0.76 +1.2
81,077 - CSW01_14375 0.77 +0.6
81,124 + CSW01_14375 0.82 -0.5
81,125 + CSW01_14375 0.82 +0.9
81,182 - CSW01_14375 0.88 +0.2
81,205 + -0.2
81,218 + +1.1
81,218 + -0.3
81,411 + CSW01_14380 0.13 +1.9
81,623 + CSW01_14380 0.38 +0.2
81,631 - CSW01_14380 0.39 +0.2
81,631 - CSW01_14380 0.39 +0.9
81,649 - CSW01_14380 0.41 -0.5
81,759 + CSW01_14380 0.53 +0.2
81,803 + CSW01_14380 0.59 +0.1
81,874 + CSW01_14380 0.67 -1.4
81,882 - CSW01_14380 0.68 -1.3
81,882 - CSW01_14380 0.68 -0.1
81,991 + CSW01_14380 0.80 +1.5
82,001 + CSW01_14380 0.81 +0.9
82,003 + CSW01_14380 0.82 -3.1
82,009 - CSW01_14380 0.82 -0.5
82,038 - CSW01_14380 0.86 +0.1
82,038 - CSW01_14380 0.86 -1.4
82,091 - +1.6
82,124 + -0.3
82,227 + -0.9
82,227 + -0.1
82,235 - +0.8
82,287 - CSW01_14385 0.16 +0.1
82,291 + CSW01_14385 0.16 -1.5
82,299 - CSW01_14385 0.17 +2.1
82,312 - CSW01_14385 0.19 -1.2
82,359 + CSW01_14385 0.25 +0.8
82,359 + CSW01_14385 0.25 -0.2
82,359 + CSW01_14385 0.25 -0.3
82,389 + CSW01_14385 0.29 +1.2
82,416 - CSW01_14385 0.32 +0.9
82,435 - CSW01_14385 0.35 +1.2
82,570 + CSW01_14385 0.52 +0.1
82,572 + CSW01_14385 0.52 +0.3
82,577 + CSW01_14385 0.53 +0.6
82,577 + CSW01_14385 0.53 -0.0
82,577 + CSW01_14385 0.53 -0.3
82,577 + CSW01_14385 0.53 -0.2
82,580 - CSW01_14385 0.53 -0.0
82,582 + CSW01_14385 0.53 +0.6
82,668 + CSW01_14385 0.64 -0.3
82,742 + CSW01_14385 0.74 +0.5
82,781 - CSW01_14385 0.79 -0.5
82,781 - CSW01_14385 0.79 -0.2
82,781 - CSW01_14385 0.79 -1.8
82,799 + CSW01_14385 0.81 -0.4
82,856 + CSW01_14385 0.89 +0.8
82,914 - +0.7
82,965 + +0.1
82,989 - +0.3
83,083 + -0.6
83,083 + +1.3
83,088 + +0.6
83,088 + +2.2
83,091 - +0.4

Or see this region's nucleotide sequence