Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14345

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14340 and CSW01_14345 overlap by 1 nucleotidesCSW01_14345 and CSW01_14350 are separated by 9 nucleotides CSW01_14340: CSW01_14340 - S9 family peptidase, at 68,874 to 70,871 _14340 CSW01_14345: CSW01_14345 - ligand-gated channel, at 70,871 to 73,012 _14345 CSW01_14350: CSW01_14350 - proconvertase P-domain protein, at 73,022 to 75,328 _14350 Position (kb) 70 71 72 73 74Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 69.897 kb on - strand, within CSW01_14340at 69.974 kb on + strand, within CSW01_14340at 70.042 kb on - strand, within CSW01_14340at 70.087 kb on + strand, within CSW01_14340at 70.165 kb on + strand, within CSW01_14340at 70.216 kb on - strand, within CSW01_14340at 70.298 kb on + strand, within CSW01_14340at 70.344 kb on + strand, within CSW01_14340at 70.516 kb on + strand, within CSW01_14340at 70.573 kb on - strand, within CSW01_14340at 70.643 kb on - strand, within CSW01_14340at 70.663 kb on - strand, within CSW01_14340at 70.746 kb on - strandat 70.784 kb on - strandat 70.793 kb on - strandat 70.993 kb on - strandat 71.030 kb on + strandat 71.038 kb on - strandat 71.195 kb on + strand, within CSW01_14345at 71.228 kb on + strand, within CSW01_14345at 71.238 kb on + strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.246 kb on - strand, within CSW01_14345at 71.253 kb on + strand, within CSW01_14345at 71.261 kb on - strand, within CSW01_14345at 71.286 kb on + strand, within CSW01_14345at 71.291 kb on + strand, within CSW01_14345at 71.294 kb on - strand, within CSW01_14345at 71.294 kb on - strand, within CSW01_14345at 71.309 kb on - strand, within CSW01_14345at 71.385 kb on - strand, within CSW01_14345at 71.397 kb on + strand, within CSW01_14345at 71.410 kb on - strand, within CSW01_14345at 71.467 kb on + strand, within CSW01_14345at 71.547 kb on + strand, within CSW01_14345at 71.690 kb on - strand, within CSW01_14345at 71.744 kb on + strand, within CSW01_14345at 71.790 kb on + strand, within CSW01_14345at 71.862 kb on + strand, within CSW01_14345at 71.862 kb on + strand, within CSW01_14345at 71.862 kb on + strand, within CSW01_14345at 72.197 kb on + strand, within CSW01_14345at 72.275 kb on - strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.683 kb on + strand, within CSW01_14345at 72.683 kb on + strand, within CSW01_14345at 72.690 kb on + strand, within CSW01_14345at 72.745 kb on - strand, within CSW01_14345at 72.745 kb on - strand, within CSW01_14345at 72.750 kb on - strand, within CSW01_14345at 72.788 kb on - strand, within CSW01_14345at 72.793 kb on - strand, within CSW01_14345at 72.793 kb on - strand, within CSW01_14345at 72.874 kb on - strandat 72.879 kb on + strandat 72.998 kb on + strandat 73.002 kb on - strandat 73.064 kb on + strandat 73.072 kb on - strandat 73.095 kb on - strandat 73.112 kb on - strandat 73.163 kb on - strandat 73.199 kb on - strandat 73.201 kb on + strandat 73.201 kb on + strandat 73.303 kb on - strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.375 kb on + strand, within CSW01_14350at 73.383 kb on - strand, within CSW01_14350at 73.471 kb on - strand, within CSW01_14350at 73.500 kb on + strand, within CSW01_14350at 73.521 kb on - strand, within CSW01_14350at 73.526 kb on - strand, within CSW01_14350at 73.647 kb on + strand, within CSW01_14350at 73.720 kb on - strand, within CSW01_14350at 73.774 kb on + strand, within CSW01_14350at 73.777 kb on - strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.855 kb on + strand, within CSW01_14350at 73.904 kb on - strand, within CSW01_14350at 74.000 kb on + strand, within CSW01_14350at 74.000 kb on + strand, within CSW01_14350at 74.008 kb on - strand, within CSW01_14350at 74.008 kb on - strand, within CSW01_14350at 74.008 kb on - strand, within CSW01_14350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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69,897 - CSW01_14340 0.51 +0.3
69,974 + CSW01_14340 0.55 -1.0
70,042 - CSW01_14340 0.58 -2.7
70,087 + CSW01_14340 0.61 +0.1
70,165 + CSW01_14340 0.65 -0.1
70,216 - CSW01_14340 0.67 +0.8
70,298 + CSW01_14340 0.71 -0.8
70,344 + CSW01_14340 0.74 -3.0
70,516 + CSW01_14340 0.82 -0.8
70,573 - CSW01_14340 0.85 -2.1
70,643 - CSW01_14340 0.89 +0.3
70,663 - CSW01_14340 0.90 +0.0
70,746 - +1.2
70,784 - -0.4
70,793 - -1.0
70,993 - -0.7
71,030 + +0.4
71,038 - +1.4
71,195 + CSW01_14345 0.15 -0.8
71,228 + CSW01_14345 0.17 -0.4
71,238 + CSW01_14345 0.17 -1.4
71,246 - CSW01_14345 0.18 +0.0
71,246 - CSW01_14345 0.18 +0.6
71,246 - CSW01_14345 0.18 -0.7
71,246 - CSW01_14345 0.18 +0.3
71,246 - CSW01_14345 0.18 -0.8
71,253 + CSW01_14345 0.18 -1.4
71,261 - CSW01_14345 0.18 -0.7
71,286 + CSW01_14345 0.19 -0.6
71,291 + CSW01_14345 0.20 -0.6
71,294 - CSW01_14345 0.20 +2.2
71,294 - CSW01_14345 0.20 +0.2
71,309 - CSW01_14345 0.20 -0.4
71,385 - CSW01_14345 0.24 +0.2
71,397 + CSW01_14345 0.25 -0.6
71,410 - CSW01_14345 0.25 -0.7
71,467 + CSW01_14345 0.28 +0.1
71,547 + CSW01_14345 0.32 +0.4
71,690 - CSW01_14345 0.38 +0.5
71,744 + CSW01_14345 0.41 -1.4
71,790 + CSW01_14345 0.43 -0.5
71,862 + CSW01_14345 0.46 -1.3
71,862 + CSW01_14345 0.46 +0.6
71,862 + CSW01_14345 0.46 -0.2
72,197 + CSW01_14345 0.62 -0.6
72,275 - CSW01_14345 0.66 -0.7
72,672 + CSW01_14345 0.84 +0.2
72,672 + CSW01_14345 0.84 +0.9
72,672 + CSW01_14345 0.84 +0.2
72,672 + CSW01_14345 0.84 +0.1
72,672 + CSW01_14345 0.84 +0.5
72,672 + CSW01_14345 0.84 -1.1
72,672 + CSW01_14345 0.84 +0.9
72,672 + CSW01_14345 0.84 -2.0
72,672 + CSW01_14345 0.84 -0.7
72,672 + CSW01_14345 0.84 -0.5
72,672 + CSW01_14345 0.84 -0.8
72,680 - CSW01_14345 0.84 -2.2
72,680 - CSW01_14345 0.84 -0.7
72,680 - CSW01_14345 0.84 +1.4
72,680 - CSW01_14345 0.84 +0.1
72,683 + CSW01_14345 0.85 -1.0
72,683 + CSW01_14345 0.85 +0.8
72,690 + CSW01_14345 0.85 -0.4
72,745 - CSW01_14345 0.87 -1.1
72,745 - CSW01_14345 0.87 -0.2
72,750 - CSW01_14345 0.88 -0.5
72,788 - CSW01_14345 0.89 -1.0
72,793 - CSW01_14345 0.90 +3.2
72,793 - CSW01_14345 0.90 +0.3
72,874 - +1.6
72,879 + +0.2
72,998 + +1.7
73,002 - +0.5
73,064 + +0.1
73,072 - -0.7
73,095 - -1.1
73,112 - -0.1
73,163 - +0.6
73,199 - -2.0
73,201 + -0.4
73,201 + +0.1
73,303 - CSW01_14350 0.12 -1.3
73,330 + CSW01_14350 0.13 +1.3
73,330 + CSW01_14350 0.13 -1.0
73,330 + CSW01_14350 0.13 +0.2
73,330 + CSW01_14350 0.13 +1.4
73,330 + CSW01_14350 0.13 -0.7
73,330 + CSW01_14350 0.13 +0.6
73,338 - CSW01_14350 0.14 -0.7
73,338 - CSW01_14350 0.14 -3.5
73,338 - CSW01_14350 0.14 +0.6
73,338 - CSW01_14350 0.14 +0.5
73,338 - CSW01_14350 0.14 +0.1
73,375 + CSW01_14350 0.15 +1.0
73,383 - CSW01_14350 0.16 -2.7
73,471 - CSW01_14350 0.19 -1.6
73,500 + CSW01_14350 0.21 -4.0
73,521 - CSW01_14350 0.22 -1.0
73,526 - CSW01_14350 0.22 -1.3
73,647 + CSW01_14350 0.27 -2.3
73,720 - CSW01_14350 0.30 +0.4
73,774 + CSW01_14350 0.33 +0.4
73,777 - CSW01_14350 0.33 +0.2
73,806 + CSW01_14350 0.34 -0.5
73,806 + CSW01_14350 0.34 -1.2
73,806 + CSW01_14350 0.34 -0.1
73,806 + CSW01_14350 0.34 -0.5
73,806 + CSW01_14350 0.34 -0.1
73,806 + CSW01_14350 0.34 -0.7
73,806 + CSW01_14350 0.34 +0.3
73,806 + CSW01_14350 0.34 -0.5
73,806 + CSW01_14350 0.34 +0.4
73,806 + CSW01_14350 0.34 +0.2
73,806 + CSW01_14350 0.34 -0.4
73,814 - CSW01_14350 0.34 -0.7
73,814 - CSW01_14350 0.34 +1.2
73,814 - CSW01_14350 0.34 -0.4
73,814 - CSW01_14350 0.34 -0.0
73,814 - CSW01_14350 0.34 +1.2
73,814 - CSW01_14350 0.34 -0.1
73,814 - CSW01_14350 0.34 +0.1
73,855 + CSW01_14350 0.36 +0.5
73,904 - CSW01_14350 0.38 -0.5
74,000 + CSW01_14350 0.42 -0.5
74,000 + CSW01_14350 0.42 -0.0
74,008 - CSW01_14350 0.43 +0.3
74,008 - CSW01_14350 0.43 +0.1
74,008 - CSW01_14350 0.43 +0.9

Or see this region's nucleotide sequence