Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14280

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14275 and CSW01_14280 overlap by 1 nucleotidesCSW01_14280 and CSW01_14285 are separated by 134 nucleotides CSW01_14275: CSW01_14275 - HlyD family secretion protein, at 54,928 to 56,058 _14275 CSW01_14280: CSW01_14280 - DUF3302 domain-containing protein, at 56,058 to 56,447 _14280 CSW01_14285: CSW01_14285 - GGDEF domain-containing protein, at 56,582 to 58,162 _14285 Position (kb) 56 57Strain fitness (log2 ratio) -2 -1 0 1at 55.134 kb on - strand, within CSW01_14275at 55.149 kb on - strand, within CSW01_14275at 55.198 kb on - strand, within CSW01_14275at 55.283 kb on + strand, within CSW01_14275at 55.286 kb on - strand, within CSW01_14275at 55.291 kb on - strand, within CSW01_14275at 55.331 kb on + strand, within CSW01_14275at 55.432 kb on + strand, within CSW01_14275at 55.445 kb on - strand, within CSW01_14275at 55.447 kb on + strand, within CSW01_14275at 55.519 kb on - strand, within CSW01_14275at 55.650 kb on - strand, within CSW01_14275at 55.703 kb on - strand, within CSW01_14275at 55.704 kb on - strand, within CSW01_14275at 55.710 kb on - strand, within CSW01_14275at 55.722 kb on + strand, within CSW01_14275at 55.790 kb on + strand, within CSW01_14275at 55.791 kb on - strand, within CSW01_14275at 55.796 kb on - strand, within CSW01_14275at 55.797 kb on - strand, within CSW01_14275at 55.896 kb on + strand, within CSW01_14275at 55.960 kb on - strandat 55.967 kb on - strandat 56.030 kb on + strandat 56.103 kb on - strand, within CSW01_14280at 56.130 kb on + strand, within CSW01_14280at 56.226 kb on + strand, within CSW01_14280at 56.249 kb on - strand, within CSW01_14280at 56.386 kb on - strand, within CSW01_14280at 56.386 kb on - strand, within CSW01_14280at 56.545 kb on + strandat 56.573 kb on - strandat 56.624 kb on + strandat 56.624 kb on + strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.678 kb on + strandat 56.996 kb on + strand, within CSW01_14285at 57.010 kb on + strand, within CSW01_14285at 57.018 kb on - strand, within CSW01_14285at 57.051 kb on - strand, within CSW01_14285at 57.086 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.368 kb on - strand, within CSW01_14285at 57.373 kb on - strand, within CSW01_14285at 57.415 kb on + strand, within CSW01_14285

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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55,134 - CSW01_14275 0.18 -0.1
55,149 - CSW01_14275 0.20 -0.8
55,198 - CSW01_14275 0.24 -0.5
55,283 + CSW01_14275 0.31 +0.5
55,286 - CSW01_14275 0.32 -2.6
55,291 - CSW01_14275 0.32 +0.0
55,331 + CSW01_14275 0.36 -0.2
55,432 + CSW01_14275 0.45 +0.6
55,445 - CSW01_14275 0.46 +0.4
55,447 + CSW01_14275 0.46 -0.3
55,519 - CSW01_14275 0.52 +0.8
55,650 - CSW01_14275 0.64 -0.6
55,703 - CSW01_14275 0.69 +0.6
55,704 - CSW01_14275 0.69 +0.5
55,710 - CSW01_14275 0.69 -1.2
55,722 + CSW01_14275 0.70 +1.1
55,790 + CSW01_14275 0.76 -2.4
55,791 - CSW01_14275 0.76 -0.1
55,796 - CSW01_14275 0.77 -1.2
55,797 - CSW01_14275 0.77 +0.2
55,896 + CSW01_14275 0.86 -0.0
55,960 - -0.4
55,967 - -0.5
56,030 + +0.3
56,103 - CSW01_14280 0.12 -0.1
56,130 + CSW01_14280 0.18 +0.6
56,226 + CSW01_14280 0.43 +0.7
56,249 - CSW01_14280 0.49 +0.6
56,386 - CSW01_14280 0.84 +0.3
56,386 - CSW01_14280 0.84 -0.2
56,545 + +0.3
56,573 - +0.2
56,624 + -0.4
56,624 + -0.0
56,632 - -0.4
56,632 - -0.7
56,632 - -1.6
56,632 - -0.5
56,678 + +1.3
56,996 + CSW01_14285 0.26 +0.3
57,010 + CSW01_14285 0.27 -1.6
57,018 - CSW01_14285 0.28 -2.2
57,051 - CSW01_14285 0.30 +0.1
57,086 - CSW01_14285 0.32 +0.2
57,257 - CSW01_14285 0.43 +0.7
57,257 - CSW01_14285 0.43 -0.6
57,302 - CSW01_14285 0.46 +0.8
57,302 - CSW01_14285 0.46 +0.4
57,368 - CSW01_14285 0.50 +0.5
57,373 - CSW01_14285 0.50 -0.8
57,415 + CSW01_14285 0.53 +0.9

Or see this region's nucleotide sequence