Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12705

Experiment: LB_Aerobic_60MIN_ZN2B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_60MIN_ZN2B
2,723,919	+		CSW01_12695	0.88	-0.9
2,723,931	+		CSW01_12695	0.89	+0.3
2,723,939	-				+1.6
2,723,939	-				-0.7
2,723,939	-				-2.3
2,724,033	-				+0.2
2,724,187	+		CSW01_12700	0.15	+1.1
2,724,195	-		CSW01_12700	0.16	-0.3
2,724,213	-		CSW01_12700	0.19	-0.7
2,724,218	-		CSW01_12700	0.20	+0.4
2,724,218	-		CSW01_12700	0.20	+0.3
2,724,227	+		CSW01_12700	0.21	+0.9
2,724,285	+		CSW01_12700	0.29	-1.8
2,724,325	+		CSW01_12700	0.34	-0.7
2,724,325	+		CSW01_12700	0.34	-0.2
2,724,325	+		CSW01_12700	0.34	-0.6
2,724,333	-		CSW01_12700	0.35	+0.8
2,724,349	+		CSW01_12700	0.37	-0.1
2,724,357	-		CSW01_12700	0.38	-0.1
2,724,459	+		CSW01_12700	0.52	-0.9
2,724,467	-		CSW01_12700	0.53	+0.3
2,724,467	-		CSW01_12700	0.53	-0.7
2,724,586	-		CSW01_12700	0.69	-0.1
2,724,594	+		CSW01_12700	0.70	+0.5
2,724,606	-		CSW01_12700	0.72	-0.8
2,724,612	-		CSW01_12700	0.73	+0.2
2,724,612	-		CSW01_12700	0.73	+0.0
2,724,638	+		CSW01_12700	0.76	-0.4
2,724,638	+		CSW01_12700	0.76	-0.8
2,724,646	-		CSW01_12700	0.78	-1.8
2,724,651	-		CSW01_12700	0.78	+1.7
2,724,672	+		CSW01_12700	0.81	-0.1
2,724,686	+		CSW01_12700	0.83	+0.5
2,724,686	+		CSW01_12700	0.83	-0.6
2,724,694	-		CSW01_12700	0.84	+0.6
2,724,701	+		CSW01_12700	0.85	-2.1
2,724,720	+		CSW01_12700	0.88	+1.7
2,724,809	-				-0.5
2,724,914	-				+0.1
2,724,969	-				+0.2
2,725,077	-				-0.1
2,725,084	+				+0.3
2,725,169	+				-0.2
2,725,169	+				-0.2
2,725,174	+				+0.5
2,725,174	+				-0.5
2,725,174	+				+0.4
2,725,174	+				+0.0
2,725,174	+				+1.2
2,725,174	+				+0.7
2,725,174	+				-0.0
2,725,174	+				+0.5
2,725,174	+				+0.3
2,725,182	-				-0.1
2,725,182	-				-0.0
2,725,182	-				+0.0
2,725,182	-				-0.4
2,725,182	-				+0.0
2,725,182	-				+2.1
2,725,182	-				-0.1
2,725,182	-				+0.5
2,725,182	-				-0.2
2,725,215	+		CSW01_12705	0.11	-0.6
2,725,215	+		CSW01_12705	0.11	+0.3
2,725,215	+		CSW01_12705	0.11	+0.4
2,725,215	+		CSW01_12705	0.11	+0.2
2,725,215	+		CSW01_12705	0.11	+0.3
2,725,223	-		CSW01_12705	0.11	-0.9
2,725,223	-		CSW01_12705	0.11	+1.3
2,725,223	-		CSW01_12705	0.11	-0.5
2,725,223	-		CSW01_12705	0.11	+0.4
2,725,223	-		CSW01_12705	0.11	-0.5
2,725,228	+		CSW01_12705	0.11	-1.5
2,725,259	+		CSW01_12705	0.12	-1.1
2,725,269	-		CSW01_12705	0.12	+0.2
2,725,361	-		CSW01_12705	0.16	-0.9
2,725,361	-		CSW01_12705	0.16	-1.3
2,725,381	-		CSW01_12705	0.16	+1.5
2,725,422	+		CSW01_12705	0.18	-0.4
2,725,429	+		CSW01_12705	0.18	+0.0
2,725,429	+		CSW01_12705	0.18	-0.3
2,725,437	-		CSW01_12705	0.18	-0.3
2,725,437	-		CSW01_12705	0.18	+1.9
2,725,437	-		CSW01_12705	0.18	-0.3
2,725,457	+		CSW01_12705	0.19	-0.3
2,725,482	-		CSW01_12705	0.20	+0.7
2,725,482	-		CSW01_12705	0.20	-1.2
2,725,482	-		CSW01_12705	0.20	-0.5
2,725,490	+		CSW01_12705	0.20	-0.5
2,725,573	-		CSW01_12705	0.23	-1.8
2,725,575	+		CSW01_12705	0.23	-0.7
2,725,636	-		CSW01_12705	0.25	-0.0
2,725,651	+		CSW01_12705	0.26	+0.4
2,725,822	+		CSW01_12705	0.31	-2.7
2,725,878	+		CSW01_12705	0.33	+0.0
2,725,879	+		CSW01_12705	0.33	-0.6
2,725,886	-		CSW01_12705	0.34	-0.1
2,725,886	-		CSW01_12705	0.34	-1.3
2,725,888	+		CSW01_12705	0.34	+0.1
2,725,907	+		CSW01_12705	0.34	-0.5
2,725,922	+		CSW01_12705	0.35	+0.1
2,726,038	+		CSW01_12705	0.39	-0.2
2,726,038	+		CSW01_12705	0.39	-2.2
2,726,046	-		CSW01_12705	0.39	-0.6
2,726,046	-		CSW01_12705	0.39	-0.2
2,726,046	-		CSW01_12705	0.39	+0.1
2,726,047	+		CSW01_12705	0.39	+0.6
2,726,047	+		CSW01_12705	0.39	-0.3
2,726,184	+		CSW01_12705	0.44	-1.3
2,726,223	-		CSW01_12705	0.45	+0.3
2,726,237	+		CSW01_12705	0.46	-0.5
2,726,271	-		CSW01_12705	0.47	+0.1
2,726,276	-		CSW01_12705	0.47	-0.7
2,726,294	+		CSW01_12705	0.48	+0.0
2,726,294	+		CSW01_12705	0.48	+1.1
2,726,314	-		CSW01_12705	0.48	-0.2
2,726,321	-		CSW01_12705	0.49	-1.8
2,726,371	-		CSW01_12705	0.50	-0.1
2,726,406	-		CSW01_12705	0.51	+0.8
2,726,467	+		CSW01_12705	0.54	-1.0
2,726,475	-		CSW01_12705	0.54	-0.1
2,726,527	-		CSW01_12705	0.56	-0.4
2,726,531	+		CSW01_12705	0.56	+0.2
2,726,539	-		CSW01_12705	0.56	+0.1
2,726,582	-		CSW01_12705	0.58	+0.1
2,726,582	-		CSW01_12705	0.58	-0.1
2,726,582	-		CSW01_12705	0.58	-0.1
2,726,663	-		CSW01_12705	0.60	-0.3
2,726,733	+		CSW01_12705	0.63	-0.3
2,726,733	+		CSW01_12705	0.63	-0.3
2,726,733	+		CSW01_12705	0.63	+0.4
2,726,733	+		CSW01_12705	0.63	-1.5
2,726,733	+		CSW01_12705	0.63	+0.0
2,726,741	-		CSW01_12705	0.63	-0.7
2,726,741	-		CSW01_12705	0.63	+0.9
2,726,741	-		CSW01_12705	0.63	-1.1
2,726,741	-		CSW01_12705	0.63	-0.2
2,726,741	-		CSW01_12705	0.63	+0.6
2,726,771	+		CSW01_12705	0.64	+0.0
2,726,779	-		CSW01_12705	0.64	-0.8
2,726,866	+		CSW01_12705	0.67	+0.0
2,726,866	+		CSW01_12705	0.67	+0.6
2,726,874	-		CSW01_12705	0.68	-0.5
2,726,874	-		CSW01_12705	0.68	-2.1
2,726,895	+		CSW01_12705	0.68	+0.8
2,726,901	-		CSW01_12705	0.68	-0.3
2,727,024	-		CSW01_12705	0.73	-0.8
2,727,059	-		CSW01_12705	0.74	+0.3
2,727,075	+		CSW01_12705	0.74	-1.5
2,727,076	-		CSW01_12705	0.75	-2.1
2,727,104	+		CSW01_12705	0.75	-0.3
2,727,105	-		CSW01_12705	0.75	+0.1
2,727,105	-		CSW01_12705	0.75	-1.1
2,727,106	-		CSW01_12705	0.76	-0.6
2,727,114	-		CSW01_12705	0.76	+0.3
2,727,114	-		CSW01_12705	0.76	-0.4
2,727,124	-		CSW01_12705	0.76	-0.8
2,727,145	+		CSW01_12705	0.77	-0.5
2,727,153	-		CSW01_12705	0.77	+0.1
2,727,153	-		CSW01_12705	0.77	-1.8
2,727,179	+		CSW01_12705	0.78	-0.0
2,727,267	-		CSW01_12705	0.81	-0.3
2,727,325	+		CSW01_12705	0.83	-0.1
2,727,344	-		CSW01_12705	0.84	+0.3
2,727,358	+		CSW01_12705	0.84	+1.7
2,727,434	-		CSW01_12705	0.87	-0.3
2,727,444	-		CSW01_12705	0.87	+0.1
2,727,476	-		CSW01_12705	0.88	-1.4
2,727,537	-				-1.2
2,727,537	-				+1.0
2,727,557	-				+0.1
2,727,572	+				+1.0
2,727,580	-				+0.4
2,727,580	-				+0.1
2,727,640	-				-0.6
2,727,640	-				+0.2
2,727,677	+				-0.4
2,727,747	-				-0.3
2,727,748	+				+0.4
2,727,751	+				-0.7
2,727,955	-		CSW01_12710	0.63	-0.4
2,727,989	+		CSW01_12710	0.79	-0.4
2,727,997	-		CSW01_12710	0.83	+0.8
2,728,053	-				+0.4
2,728,055	+				-1.1
2,728,056	-				+0.8
2,728,063	-				+1.7
2,728,063	-				+0.6
2,728,063	-				+0.3
2,728,068	+				-0.6
2,728,068	+				+0.6
2,728,076	-				+0.1
2,728,127	-				+0.5
2,728,158	+				+0.2
2,728,190	+				-0.2
2,728,243	-				+0.2
2,728,249	-				-1.1
2,728,289	+				+0.0
2,728,455	-		CSW01_12715	0.16	+0.1
2,728,522	+		CSW01_12715	0.21	+2.4
2,728,530	-		CSW01_12715	0.21	+0.1
2,728,532	+		CSW01_12715	0.21	-0.0
2,728,550	-		CSW01_12715	0.23	-1.2
2,728,610	+		CSW01_12715	0.27	-0.5
2,728,613	-		CSW01_12715	0.27	-1.5
2,728,618	-		CSW01_12715	0.28	-1.2
2,728,671	+		CSW01_12715	0.31	+0.6
2,728,672	-		CSW01_12715	0.31	-0.8
2,728,705	-		CSW01_12715	0.34	-0.1
2,728,736	+		CSW01_12715	0.36	+0.3
2,728,736	+		CSW01_12715	0.36	-0.4
2,728,777	+		CSW01_12715	0.39	+1.5
2,728,777	+		CSW01_12715	0.39	-0.7
2,728,785	-		CSW01_12715	0.40	+0.4