Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10105

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10100 and CSW01_10105 are separated by 54 nucleotidesCSW01_10105 and CSW01_10110 are separated by 5 nucleotides CSW01_10100: CSW01_10100 - [acyl-carrier-protein] S-malonyltransferase, at 2,174,107 to 2,175,045 _10100 CSW01_10105: CSW01_10105 - 3-oxoacyl-ACP synthase III, at 2,175,100 to 2,176,050 _10105 CSW01_10110: CSW01_10110 - phosphate acyltransferase, at 2,176,056 to 2,177,081 _10110 Position (kb) 2175 2176 2177Strain fitness (log2 ratio) -1 0 1at 2175.098 kb on + strandat 2176.510 kb on + strand, within CSW01_10110

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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2,175,098 + -0.9
2,176,510 + CSW01_10110 0.44 +0.5

Or see this region's nucleotide sequence