Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08080

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08075 and CSW01_08080 are separated by 11 nucleotidesCSW01_08080 and CSW01_08085 are separated by 3 nucleotides CSW01_08075: CSW01_08075 - TolC family protein, at 1,719,179 to 1,720,609 _08075 CSW01_08080: CSW01_08080 - HlyD family secretion protein, at 1,720,621 to 1,721,595 _08080 CSW01_08085: CSW01_08085 - ABC transporter permease, at 1,721,599 to 1,722,762 _08085 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -2 -1 0 1 2at 1719.743 kb on + strand, within CSW01_08075at 1719.753 kb on + strand, within CSW01_08075at 1719.886 kb on - strand, within CSW01_08075at 1719.930 kb on + strand, within CSW01_08075at 1719.930 kb on + strand, within CSW01_08075at 1719.930 kb on + strand, within CSW01_08075at 1719.930 kb on + strand, within CSW01_08075at 1719.938 kb on - strand, within CSW01_08075at 1719.943 kb on - strand, within CSW01_08075at 1719.958 kb on - strand, within CSW01_08075at 1719.958 kb on - strand, within CSW01_08075at 1720.025 kb on - strand, within CSW01_08075at 1720.025 kb on - strand, within CSW01_08075at 1720.025 kb on - strand, within CSW01_08075at 1720.025 kb on - strand, within CSW01_08075at 1720.025 kb on - strand, within CSW01_08075at 1720.060 kb on + strand, within CSW01_08075at 1720.060 kb on + strand, within CSW01_08075at 1720.060 kb on + strand, within CSW01_08075at 1720.068 kb on - strand, within CSW01_08075at 1720.068 kb on - strand, within CSW01_08075at 1720.175 kb on + strand, within CSW01_08075at 1720.175 kb on + strand, within CSW01_08075at 1720.175 kb on + strand, within CSW01_08075at 1720.219 kb on + strand, within CSW01_08075at 1720.227 kb on - strand, within CSW01_08075at 1720.227 kb on - strand, within CSW01_08075at 1720.227 kb on - strand, within CSW01_08075at 1720.227 kb on - strand, within CSW01_08075at 1720.319 kb on + strand, within CSW01_08075at 1720.576 kb on + strandat 1720.585 kb on + strandat 1720.707 kb on - strandat 1720.742 kb on - strand, within CSW01_08080at 1720.760 kb on + strand, within CSW01_08080at 1720.768 kb on - strand, within CSW01_08080at 1720.848 kb on - strand, within CSW01_08080at 1720.848 kb on - strand, within CSW01_08080at 1720.850 kb on - strand, within CSW01_08080at 1720.931 kb on + strand, within CSW01_08080at 1721.026 kb on - strand, within CSW01_08080at 1721.075 kb on + strand, within CSW01_08080at 1721.282 kb on + strand, within CSW01_08080at 1721.282 kb on + strand, within CSW01_08080at 1721.290 kb on - strand, within CSW01_08080at 1721.292 kb on - strand, within CSW01_08080at 1721.337 kb on + strand, within CSW01_08080at 1721.345 kb on - strand, within CSW01_08080at 1721.345 kb on - strand, within CSW01_08080at 1721.347 kb on + strand, within CSW01_08080at 1721.347 kb on + strand, within CSW01_08080at 1721.347 kb on + strand, within CSW01_08080at 1721.356 kb on - strand, within CSW01_08080at 1721.504 kb on + strandat 1721.505 kb on - strandat 1721.512 kb on - strandat 1721.824 kb on + strand, within CSW01_08085at 1721.887 kb on - strand, within CSW01_08085at 1721.889 kb on - strand, within CSW01_08085at 1721.894 kb on + strand, within CSW01_08085at 1721.894 kb on + strand, within CSW01_08085at 1721.894 kb on + strand, within CSW01_08085at 1721.962 kb on + strand, within CSW01_08085at 1722.005 kb on - strand, within CSW01_08085at 1722.005 kb on - strand, within CSW01_08085at 1722.125 kb on - strand, within CSW01_08085at 1722.253 kb on + strand, within CSW01_08085at 1722.261 kb on + strand, within CSW01_08085at 1722.288 kb on - strand, within CSW01_08085at 1722.312 kb on - strand, within CSW01_08085at 1722.367 kb on + strand, within CSW01_08085at 1722.367 kb on + strand, within CSW01_08085at 1722.372 kb on + strand, within CSW01_08085at 1722.375 kb on - strand, within CSW01_08085at 1722.375 kb on - strand, within CSW01_08085at 1722.385 kb on - strand, within CSW01_08085at 1722.393 kb on + strand, within CSW01_08085at 1722.393 kb on + strand, within CSW01_08085at 1722.536 kb on + strand, within CSW01_08085

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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1,719,743 + CSW01_08075 0.39 +0.0
1,719,753 + CSW01_08075 0.40 -0.8
1,719,886 - CSW01_08075 0.49 -0.9
1,719,930 + CSW01_08075 0.52 -0.3
1,719,930 + CSW01_08075 0.52 -0.2
1,719,930 + CSW01_08075 0.52 +1.1
1,719,930 + CSW01_08075 0.52 -0.7
1,719,938 - CSW01_08075 0.53 +0.5
1,719,943 - CSW01_08075 0.53 +2.1
1,719,958 - CSW01_08075 0.54 +0.0
1,719,958 - CSW01_08075 0.54 +2.0
1,720,025 - CSW01_08075 0.59 +0.0
1,720,025 - CSW01_08075 0.59 -0.1
1,720,025 - CSW01_08075 0.59 -1.0
1,720,025 - CSW01_08075 0.59 +0.5
1,720,025 - CSW01_08075 0.59 +1.0
1,720,060 + CSW01_08075 0.62 -0.3
1,720,060 + CSW01_08075 0.62 +0.5
1,720,060 + CSW01_08075 0.62 -1.1
1,720,068 - CSW01_08075 0.62 -0.7
1,720,068 - CSW01_08075 0.62 -0.2
1,720,175 + CSW01_08075 0.70 -0.5
1,720,175 + CSW01_08075 0.70 -0.7
1,720,175 + CSW01_08075 0.70 -0.4
1,720,219 + CSW01_08075 0.73 +2.1
1,720,227 - CSW01_08075 0.73 -1.8
1,720,227 - CSW01_08075 0.73 +1.1
1,720,227 - CSW01_08075 0.73 -0.5
1,720,227 - CSW01_08075 0.73 -2.0
1,720,319 + CSW01_08075 0.80 -0.6
1,720,576 + -2.2
1,720,585 + +0.1
1,720,707 - -0.9
1,720,742 - CSW01_08080 0.12 +0.0
1,720,760 + CSW01_08080 0.14 -0.3
1,720,768 - CSW01_08080 0.15 +2.4
1,720,848 - CSW01_08080 0.23 +0.8
1,720,848 - CSW01_08080 0.23 +1.0
1,720,850 - CSW01_08080 0.23 +0.6
1,720,931 + CSW01_08080 0.32 -0.1
1,721,026 - CSW01_08080 0.42 -0.9
1,721,075 + CSW01_08080 0.47 +2.5
1,721,282 + CSW01_08080 0.68 -0.2
1,721,282 + CSW01_08080 0.68 +0.3
1,721,290 - CSW01_08080 0.69 -0.9
1,721,292 - CSW01_08080 0.69 -0.9
1,721,337 + CSW01_08080 0.73 +0.4
1,721,345 - CSW01_08080 0.74 -0.3
1,721,345 - CSW01_08080 0.74 -0.5
1,721,347 + CSW01_08080 0.74 -0.8
1,721,347 + CSW01_08080 0.74 -0.3
1,721,347 + CSW01_08080 0.74 -1.1
1,721,356 - CSW01_08080 0.75 -0.2
1,721,504 + +0.3
1,721,505 - -0.6
1,721,512 - -0.7
1,721,824 + CSW01_08085 0.19 -0.5
1,721,887 - CSW01_08085 0.25 -0.0
1,721,889 - CSW01_08085 0.25 -0.5
1,721,894 + CSW01_08085 0.25 +0.2
1,721,894 + CSW01_08085 0.25 +0.5
1,721,894 + CSW01_08085 0.25 -2.0
1,721,962 + CSW01_08085 0.31 -1.0
1,722,005 - CSW01_08085 0.35 +0.8
1,722,005 - CSW01_08085 0.35 +1.0
1,722,125 - CSW01_08085 0.45 +0.8
1,722,253 + CSW01_08085 0.56 -1.3
1,722,261 + CSW01_08085 0.57 -1.0
1,722,288 - CSW01_08085 0.59 -0.3
1,722,312 - CSW01_08085 0.61 +0.9
1,722,367 + CSW01_08085 0.66 -0.6
1,722,367 + CSW01_08085 0.66 -0.0
1,722,372 + CSW01_08085 0.66 -0.4
1,722,375 - CSW01_08085 0.67 +0.0
1,722,375 - CSW01_08085 0.67 -0.9
1,722,385 - CSW01_08085 0.68 -1.6
1,722,393 + CSW01_08085 0.68 -0.3
1,722,393 + CSW01_08085 0.68 +0.8
1,722,536 + CSW01_08085 0.80 -0.3

Or see this region's nucleotide sequence