Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07510

Experiment: LB_Aerobic_60MIN_ZN2B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_07505 and CSW01_07510 are separated by 198 nucleotidesCSW01_07510 and CSW01_07515 are separated by 108 nucleotides CSW01_07505: CSW01_07505 - aminopeptidase N, at 1,601,633 to 1,604,239 _07505 CSW01_07510: CSW01_07510 - hypothetical protein, at 1,604,438 to 1,605,154 _07510 CSW01_07515: CSW01_07515 - tail-specific protease, at 1,605,263 to 1,607,260 _07515 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1603.444 kb on - strand, within CSW01_07505at 1603.539 kb on + strand, within CSW01_07505at 1603.681 kb on - strand, within CSW01_07505at 1603.703 kb on - strand, within CSW01_07505at 1603.878 kb on + strand, within CSW01_07505at 1603.878 kb on + strand, within CSW01_07505at 1603.890 kb on + strand, within CSW01_07505at 1603.932 kb on + strand, within CSW01_07505at 1604.130 kb on - strandat 1604.219 kb on + strandat 1604.227 kb on - strandat 1604.241 kb on + strandat 1604.347 kb on - strandat 1604.435 kb on + strandat 1604.517 kb on - strand, within CSW01_07510at 1604.517 kb on - strand, within CSW01_07510at 1604.555 kb on + strand, within CSW01_07510at 1604.565 kb on + strand, within CSW01_07510at 1604.565 kb on + strand, within CSW01_07510at 1604.565 kb on + strand, within CSW01_07510at 1604.565 kb on + strand, within CSW01_07510at 1604.565 kb on + strand, within CSW01_07510at 1604.573 kb on - strand, within CSW01_07510at 1604.573 kb on - strand, within CSW01_07510at 1604.575 kb on - strand, within CSW01_07510at 1604.705 kb on + strand, within CSW01_07510at 1604.755 kb on - strand, within CSW01_07510at 1604.804 kb on - strand, within CSW01_07510at 1604.832 kb on - strand, within CSW01_07510at 1604.919 kb on + strand, within CSW01_07510at 1605.291 kb on - strandat 1605.573 kb on + strand, within CSW01_07515at 1605.637 kb on + strand, within CSW01_07515at 1605.760 kb on - strand, within CSW01_07515at 1605.772 kb on - strand, within CSW01_07515at 1605.812 kb on - strand, within CSW01_07515at 1605.869 kb on + strand, within CSW01_07515at 1605.869 kb on + strand, within CSW01_07515at 1605.917 kb on - strand, within CSW01_07515at 1605.946 kb on + strand, within CSW01_07515at 1605.969 kb on + strand, within CSW01_07515at 1605.988 kb on - strand, within CSW01_07515at 1606.036 kb on - strand, within CSW01_07515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
remove
1,603,444 - CSW01_07505 0.69 +0.3
1,603,539 + CSW01_07505 0.73 -0.0
1,603,681 - CSW01_07505 0.79 +0.4
1,603,703 - CSW01_07505 0.79 -0.0
1,603,878 + CSW01_07505 0.86 +0.4
1,603,878 + CSW01_07505 0.86 +0.7
1,603,890 + CSW01_07505 0.87 +0.2
1,603,932 + CSW01_07505 0.88 -0.1
1,604,130 - -1.4
1,604,219 + -1.4
1,604,227 - +1.7
1,604,241 + -2.9
1,604,347 - -0.2
1,604,435 + +1.5
1,604,517 - CSW01_07510 0.11 +1.6
1,604,517 - CSW01_07510 0.11 +0.4
1,604,555 + CSW01_07510 0.16 +0.1
1,604,565 + CSW01_07510 0.18 +0.1
1,604,565 + CSW01_07510 0.18 -0.2
1,604,565 + CSW01_07510 0.18 +0.1
1,604,565 + CSW01_07510 0.18 +0.4
1,604,565 + CSW01_07510 0.18 -2.0
1,604,573 - CSW01_07510 0.19 -1.3
1,604,573 - CSW01_07510 0.19 +1.8
1,604,575 - CSW01_07510 0.19 -0.4
1,604,705 + CSW01_07510 0.37 -0.3
1,604,755 - CSW01_07510 0.44 -0.1
1,604,804 - CSW01_07510 0.51 -2.3
1,604,832 - CSW01_07510 0.55 +0.2
1,604,919 + CSW01_07510 0.67 +1.4
1,605,291 - +0.7
1,605,573 + CSW01_07515 0.16 +1.1
1,605,637 + CSW01_07515 0.19 -0.1
1,605,760 - CSW01_07515 0.25 +0.6
1,605,772 - CSW01_07515 0.25 +1.0
1,605,812 - CSW01_07515 0.27 +0.9
1,605,869 + CSW01_07515 0.30 +1.3
1,605,869 + CSW01_07515 0.30 -0.2
1,605,917 - CSW01_07515 0.33 +1.0
1,605,946 + CSW01_07515 0.34 +0.8
1,605,969 + CSW01_07515 0.35 -0.1
1,605,988 - CSW01_07515 0.36 -1.2
1,606,036 - CSW01_07515 0.39 +0.0

Or see this region's nucleotide sequence