Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07470

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07465 and CSW01_07470 are separated by 5 nucleotidesCSW01_07470 and CSW01_07475 overlap by 23 nucleotidesCSW01_07475 and CSW01_07480 are separated by 8 nucleotides CSW01_07465: CSW01_07465 - DUF3466 domain-containing protein, at 1,588,118 to 1,589,812 _07465 CSW01_07470: CSW01_07470 - ABC transporter ATP-binding protein, at 1,589,818 to 1,591,737 _07470 CSW01_07475: CSW01_07475 - glutaredoxin family protein, at 1,591,715 to 1,591,957 _07475 CSW01_07480: CSW01_07480 - ribosomal RNA large subunit methyltransferase K/L, at 1,591,966 to 1,594,092 _07480 Position (kb) 1589 1590 1591 1592Strain fitness (log2 ratio) -2 -1 0 1 2at 1590.240 kb on - strand, within CSW01_07470at 1590.272 kb on - strand, within CSW01_07470at 1590.426 kb on - strand, within CSW01_07470at 1590.595 kb on - strand, within CSW01_07470at 1590.824 kb on + strand, within CSW01_07470at 1590.832 kb on - strand, within CSW01_07470at 1590.832 kb on - strand, within CSW01_07470at 1590.912 kb on + strand, within CSW01_07470at 1590.989 kb on - strand, within CSW01_07470at 1591.079 kb on + strand, within CSW01_07470at 1591.087 kb on - strand, within CSW01_07470at 1591.087 kb on - strand, within CSW01_07470at 1591.087 kb on - strand, within CSW01_07470at 1591.087 kb on - strand, within CSW01_07470at 1591.087 kb on - strand, within CSW01_07470at 1591.244 kb on + strand, within CSW01_07470at 1591.252 kb on - strand, within CSW01_07470at 1591.252 kb on - strand, within CSW01_07470at 1591.259 kb on + strand, within CSW01_07470at 1591.259 kb on + strand, within CSW01_07470at 1591.461 kb on + strand, within CSW01_07470at 1591.561 kb on - strandat 1591.595 kb on + strandat 1591.749 kb on - strand, within CSW01_07475at 1591.906 kb on - strand, within CSW01_07475at 1591.910 kb on + strand, within CSW01_07475at 1591.933 kb on + strandat 1591.933 kb on + strandat 1591.941 kb on - strandat 1591.943 kb on + strandat 1592.032 kb on + strandat 1592.200 kb on + strand, within CSW01_07480at 1592.265 kb on - strand, within CSW01_07480at 1592.277 kb on + strand, within CSW01_07480at 1592.277 kb on + strand, within CSW01_07480at 1592.280 kb on + strand, within CSW01_07480at 1592.285 kb on - strand, within CSW01_07480at 1592.285 kb on - strand, within CSW01_07480at 1592.285 kb on - strand, within CSW01_07480at 1592.288 kb on - strand, within CSW01_07480at 1592.478 kb on - strand, within CSW01_07480at 1592.517 kb on - strand, within CSW01_07480at 1592.517 kb on - strand, within CSW01_07480at 1592.578 kb on + strand, within CSW01_07480at 1592.587 kb on - strand, within CSW01_07480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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1,590,240 - CSW01_07470 0.22 +0.7
1,590,272 - CSW01_07470 0.24 -0.4
1,590,426 - CSW01_07470 0.32 -0.2
1,590,595 - CSW01_07470 0.40 +0.4
1,590,824 + CSW01_07470 0.52 -0.1
1,590,832 - CSW01_07470 0.53 -0.7
1,590,832 - CSW01_07470 0.53 -0.6
1,590,912 + CSW01_07470 0.57 +0.9
1,590,989 - CSW01_07470 0.61 -0.0
1,591,079 + CSW01_07470 0.66 +0.4
1,591,087 - CSW01_07470 0.66 -2.2
1,591,087 - CSW01_07470 0.66 -0.6
1,591,087 - CSW01_07470 0.66 +0.6
1,591,087 - CSW01_07470 0.66 -0.6
1,591,087 - CSW01_07470 0.66 -0.2
1,591,244 + CSW01_07470 0.74 +1.0
1,591,252 - CSW01_07470 0.75 -0.4
1,591,252 - CSW01_07470 0.75 -0.4
1,591,259 + CSW01_07470 0.75 +0.3
1,591,259 + CSW01_07470 0.75 -0.3
1,591,461 + CSW01_07470 0.86 -1.4
1,591,561 - -1.2
1,591,595 + +2.3
1,591,749 - CSW01_07475 0.14 +0.3
1,591,906 - CSW01_07475 0.79 +1.5
1,591,910 + CSW01_07475 0.80 +0.6
1,591,933 + -0.6
1,591,933 + -0.4
1,591,941 - -0.0
1,591,943 + -1.4
1,592,032 + +0.8
1,592,200 + CSW01_07480 0.11 -0.4
1,592,265 - CSW01_07480 0.14 -1.1
1,592,277 + CSW01_07480 0.15 +0.6
1,592,277 + CSW01_07480 0.15 +1.3
1,592,280 + CSW01_07480 0.15 +0.3
1,592,285 - CSW01_07480 0.15 -0.1
1,592,285 - CSW01_07480 0.15 -0.3
1,592,285 - CSW01_07480 0.15 -1.0
1,592,288 - CSW01_07480 0.15 +0.3
1,592,478 - CSW01_07480 0.24 -0.1
1,592,517 - CSW01_07480 0.26 +0.5
1,592,517 - CSW01_07480 0.26 -1.8
1,592,578 + CSW01_07480 0.29 -0.1
1,592,587 - CSW01_07480 0.29 -0.2

Or see this region's nucleotide sequence