Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04550

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04545 and CSW01_04550 are separated by 88 nucleotidesCSW01_04550 and CSW01_04555 are separated by 0 nucleotidesCSW01_04555 and CSW01_04560 are separated by 97 nucleotides CSW01_04545: CSW01_04545 - DUF3549 domain-containing protein, at 943,992 to 945,029 _04545 CSW01_04550: CSW01_04550 - pseudouridine synthase, at 945,118 to 945,429 _04550 CSW01_04555: CSW01_04555 - tRNA pseudouridine(65) synthase TruC, at 945,430 to 946,164 _04555 CSW01_04560: CSW01_04560 - 1-deoxy-D-xylulose-5-phosphate synthase, at 946,262 to 948,142 _04560 Position (kb) 945 946Strain fitness (log2 ratio) -2 -1 0 1 2 3at 944.132 kb on + strand, within CSW01_04545at 944.140 kb on - strand, within CSW01_04545at 944.233 kb on - strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.371 kb on - strand, within CSW01_04545at 944.414 kb on + strand, within CSW01_04545at 944.419 kb on + strand, within CSW01_04545at 944.421 kb on + strand, within CSW01_04545at 944.429 kb on - strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.439 kb on - strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.465 kb on - strand, within CSW01_04545at 944.482 kb on - strand, within CSW01_04545at 944.563 kb on - strand, within CSW01_04545at 944.611 kb on + strand, within CSW01_04545at 944.619 kb on - strand, within CSW01_04545at 944.726 kb on - strand, within CSW01_04545at 944.727 kb on - strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.807 kb on + strand, within CSW01_04545at 944.833 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.893 kb on + strand, within CSW01_04545at 944.915 kb on - strand, within CSW01_04545at 945.062 kb on + strandat 945.123 kb on + strandat 945.131 kb on - strandat 945.131 kb on - strandat 945.173 kb on + strand, within CSW01_04550at 945.214 kb on + strand, within CSW01_04550at 945.224 kb on + strand, within CSW01_04550at 945.232 kb on - strand, within CSW01_04550at 945.250 kb on + strand, within CSW01_04550at 945.250 kb on + strand, within CSW01_04550at 945.258 kb on - strand, within CSW01_04550at 945.367 kb on + strand, within CSW01_04550at 945.416 kb on + strandat 945.516 kb on + strand, within CSW01_04555at 945.524 kb on - strand, within CSW01_04555at 945.615 kb on - strand, within CSW01_04555at 945.615 kb on - strand, within CSW01_04555at 945.615 kb on - strand, within CSW01_04555at 945.638 kb on + strand, within CSW01_04555at 945.724 kb on + strand, within CSW01_04555at 945.840 kb on + strand, within CSW01_04555at 945.894 kb on + strand, within CSW01_04555at 945.919 kb on - strand, within CSW01_04555at 945.921 kb on - strand, within CSW01_04555at 945.970 kb on - strand, within CSW01_04555at 945.970 kb on - strand, within CSW01_04555at 946.061 kb on + strand, within CSW01_04555at 946.061 kb on + strand, within CSW01_04555at 946.067 kb on - strand, within CSW01_04555at 946.069 kb on - strand, within CSW01_04555at 946.069 kb on - strand, within CSW01_04555at 946.083 kb on + strand, within CSW01_04555at 946.093 kb on + strandat 946.101 kb on - strandat 946.101 kb on - strandat 946.101 kb on - strandat 946.101 kb on - strandat 946.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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944,132 + CSW01_04545 0.13 +0.8
944,140 - CSW01_04545 0.14 +0.9
944,233 - CSW01_04545 0.23 +0.3
944,310 + CSW01_04545 0.31 -2.1
944,310 + CSW01_04545 0.31 -0.2
944,318 - CSW01_04545 0.31 +0.0
944,318 - CSW01_04545 0.31 -0.3
944,318 - CSW01_04545 0.31 +1.2
944,371 - CSW01_04545 0.37 -0.8
944,414 + CSW01_04545 0.41 -1.2
944,419 + CSW01_04545 0.41 +0.3
944,421 + CSW01_04545 0.41 +0.4
944,429 - CSW01_04545 0.42 -1.5
944,431 + CSW01_04545 0.42 +0.0
944,431 + CSW01_04545 0.42 -1.7
944,439 - CSW01_04545 0.43 -0.8
944,464 + CSW01_04545 0.45 -0.1
944,464 + CSW01_04545 0.45 -2.4
944,465 - CSW01_04545 0.46 -0.2
944,482 - CSW01_04545 0.47 +1.6
944,563 - CSW01_04545 0.55 +0.5
944,611 + CSW01_04545 0.60 +0.2
944,619 - CSW01_04545 0.60 +0.2
944,726 - CSW01_04545 0.71 +0.4
944,727 - CSW01_04545 0.71 -0.6
944,773 + CSW01_04545 0.75 +1.6
944,773 + CSW01_04545 0.75 +0.6
944,807 + CSW01_04545 0.79 +0.4
944,833 + CSW01_04545 0.81 +0.9
944,843 + CSW01_04545 0.82 -0.2
944,843 + CSW01_04545 0.82 +0.6
944,851 - CSW01_04545 0.83 +0.7
944,851 - CSW01_04545 0.83 -1.2
944,893 + CSW01_04545 0.87 +0.1
944,915 - CSW01_04545 0.89 -0.9
945,062 + -0.3
945,123 + +1.0
945,131 - -0.7
945,131 - -0.5
945,173 + CSW01_04550 0.18 -0.6
945,214 + CSW01_04550 0.31 -1.5
945,224 + CSW01_04550 0.34 -1.6
945,232 - CSW01_04550 0.37 -1.1
945,250 + CSW01_04550 0.42 +0.8
945,250 + CSW01_04550 0.42 -0.8
945,258 - CSW01_04550 0.45 -1.6
945,367 + CSW01_04550 0.80 +0.9
945,416 + -0.2
945,516 + CSW01_04555 0.12 -0.1
945,524 - CSW01_04555 0.13 -0.6
945,615 - CSW01_04555 0.25 +0.6
945,615 - CSW01_04555 0.25 -0.1
945,615 - CSW01_04555 0.25 +2.8
945,638 + CSW01_04555 0.28 -0.1
945,724 + CSW01_04555 0.40 -0.6
945,840 + CSW01_04555 0.56 +0.2
945,894 + CSW01_04555 0.63 +0.9
945,919 - CSW01_04555 0.67 +0.0
945,921 - CSW01_04555 0.67 -0.3
945,970 - CSW01_04555 0.73 +1.7
945,970 - CSW01_04555 0.73 -1.4
946,061 + CSW01_04555 0.86 -0.2
946,061 + CSW01_04555 0.86 +2.2
946,067 - CSW01_04555 0.87 -1.9
946,069 - CSW01_04555 0.87 -2.6
946,069 - CSW01_04555 0.87 +1.0
946,083 + CSW01_04555 0.89 +0.1
946,093 + +0.0
946,101 - -0.3
946,101 - -1.4
946,101 - +0.3
946,101 - -0.1
946,208 + +0.1

Or see this region's nucleotide sequence