Experiment: LB_Aerobic_60MIN_ZN2B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04160 and CSW01_04165 are separated by 67 nucleotides CSW01_04165 and CSW01_04170 overlap by 29 nucleotides CSW01_04170 and CSW01_04175 are separated by 8 nucleotides
CSW01_04160: CSW01_04160 - NAD(P)/FAD-dependent oxidoreductase, at 859,526 to 861,142
_04160
CSW01_04165: CSW01_04165 - MFS transporter, at 861,210 to 861,893
_04165
CSW01_04170: CSW01_04170 - hypothetical protein, at 861,865 to 862,017
_04170
CSW01_04175: CSW01_04175 - SWIM zinc finger domain-containing protein, at 862,026 to 863,795
_04175
Position (kb)
861
862 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 860.256 kb on + strand, within CSW01_04160 at 860.256 kb on + strand, within CSW01_04160 at 860.272 kb on - strand, within CSW01_04160 at 860.324 kb on + strand, within CSW01_04160 at 860.339 kb on - strand, within CSW01_04160 at 860.464 kb on - strand, within CSW01_04160 at 860.510 kb on + strand, within CSW01_04160 at 860.510 kb on + strand, within CSW01_04160 at 860.517 kb on + strand, within CSW01_04160 at 860.546 kb on - strand, within CSW01_04160 at 860.546 kb on - strand, within CSW01_04160 at 860.600 kb on - strand, within CSW01_04160 at 860.630 kb on + strand, within CSW01_04160 at 860.641 kb on + strand, within CSW01_04160 at 860.651 kb on + strand, within CSW01_04160 at 860.664 kb on - strand, within CSW01_04160 at 860.715 kb on + strand, within CSW01_04160 at 860.723 kb on - strand, within CSW01_04160 at 860.723 kb on - strand, within CSW01_04160 at 860.777 kb on + strand, within CSW01_04160 at 860.786 kb on - strand, within CSW01_04160 at 860.799 kb on + strand, within CSW01_04160 at 860.853 kb on - strand, within CSW01_04160 at 860.855 kb on + strand, within CSW01_04160 at 861.013 kb on + strand at 861.020 kb on + strand at 861.022 kb on + strand at 861.049 kb on - strand at 861.049 kb on - strand at 861.057 kb on + strand at 861.121 kb on + strand at 861.177 kb on - strand at 861.177 kb on - strand at 861.262 kb on + strand at 861.327 kb on + strand, within CSW01_04165 at 861.411 kb on + strand, within CSW01_04165 at 861.454 kb on + strand, within CSW01_04165 at 861.497 kb on - strand, within CSW01_04165 at 861.511 kb on + strand, within CSW01_04165 at 861.513 kb on + strand, within CSW01_04165 at 861.516 kb on - strand, within CSW01_04165 at 861.640 kb on + strand, within CSW01_04165 at 861.761 kb on + strand, within CSW01_04165 at 861.767 kb on + strand, within CSW01_04165 at 861.792 kb on + strand, within CSW01_04165 at 861.796 kb on + strand, within CSW01_04165 at 861.858 kb on - strand at 861.860 kb on + strand at 861.868 kb on - strand at 861.948 kb on - strand, within CSW01_04170 at 861.952 kb on - strand, within CSW01_04170 at 861.973 kb on + strand, within CSW01_04170 at 861.989 kb on + strand, within CSW01_04170 at 861.997 kb on - strand, within CSW01_04170 at 862.023 kb on + strand at 862.152 kb on - strand at 862.161 kb on - strand at 862.163 kb on + strand at 862.197 kb on - strand at 862.223 kb on + strand, within CSW01_04175 at 862.244 kb on - strand, within CSW01_04175 at 862.265 kb on - strand, within CSW01_04175 at 862.279 kb on - strand, within CSW01_04175 at 862.306 kb on + strand, within CSW01_04175 at 862.321 kb on - strand, within CSW01_04175 at 862.357 kb on - strand, within CSW01_04175 at 862.376 kb on + strand, within CSW01_04175 at 862.384 kb on - strand, within CSW01_04175 at 862.384 kb on - strand, within CSW01_04175 at 862.599 kb on - strand, within CSW01_04175 at 862.630 kb on + strand, within CSW01_04175 at 862.630 kb on + strand, within CSW01_04175 at 862.630 kb on + strand, within CSW01_04175 at 862.671 kb on + strand, within CSW01_04175 at 862.714 kb on + strand, within CSW01_04175 at 862.723 kb on - strand, within CSW01_04175 at 862.728 kb on + strand, within CSW01_04175 at 862.736 kb on - strand, within CSW01_04175 at 862.736 kb on - strand, within CSW01_04175 at 862.760 kb on + strand, within CSW01_04175 at 862.760 kb on + strand, within CSW01_04175 at 862.793 kb on + strand, within CSW01_04175 at 862.880 kb on + strand, within CSW01_04175
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B remove 860,256 + CSW01_04160 0.45 -0.7 860,256 + CSW01_04160 0.45 +3.4 860,272 - CSW01_04160 0.46 +0.3 860,324 + CSW01_04160 0.49 -0.6 860,339 - CSW01_04160 0.50 -0.5 860,464 - CSW01_04160 0.58 +1.0 860,510 + CSW01_04160 0.61 -0.5 860,510 + CSW01_04160 0.61 +0.4 860,517 + CSW01_04160 0.61 +0.5 860,546 - CSW01_04160 0.63 +1.0 860,546 - CSW01_04160 0.63 -1.2 860,600 - CSW01_04160 0.66 -0.1 860,630 + CSW01_04160 0.68 -0.1 860,641 + CSW01_04160 0.69 -0.1 860,651 + CSW01_04160 0.70 -0.3 860,664 - CSW01_04160 0.70 +0.4 860,715 + CSW01_04160 0.74 +0.2 860,723 - CSW01_04160 0.74 -2.2 860,723 - CSW01_04160 0.74 +0.1 860,777 + CSW01_04160 0.77 +0.4 860,786 - CSW01_04160 0.78 +0.7 860,799 + CSW01_04160 0.79 +0.7 860,853 - CSW01_04160 0.82 -0.2 860,855 + CSW01_04160 0.82 -0.3 861,013 + +0.3 861,020 + -0.6 861,022 + +0.5 861,049 - -0.8 861,049 - +0.2 861,057 + -1.2 861,121 + +0.6 861,177 - +1.2 861,177 - +0.2 861,262 + +0.6 861,327 + CSW01_04165 0.17 -0.3 861,411 + CSW01_04165 0.29 +0.2 861,454 + CSW01_04165 0.36 +0.8 861,497 - CSW01_04165 0.42 +1.1 861,511 + CSW01_04165 0.44 +0.1 861,513 + CSW01_04165 0.44 -0.2 861,516 - CSW01_04165 0.45 -0.2 861,640 + CSW01_04165 0.63 -0.6 861,761 + CSW01_04165 0.81 -0.1 861,767 + CSW01_04165 0.81 +0.4 861,792 + CSW01_04165 0.85 +1.3 861,796 + CSW01_04165 0.86 +0.1 861,858 - +0.3 861,860 + +0.5 861,868 - +0.3 861,948 - CSW01_04170 0.54 -0.3 861,952 - CSW01_04170 0.57 +0.1 861,973 + CSW01_04170 0.71 -0.4 861,989 + CSW01_04170 0.81 -0.2 861,997 - CSW01_04170 0.86 -0.4 862,023 + +0.6 862,152 - -0.1 862,161 - +0.0 862,163 + -1.0 862,197 - +0.1 862,223 + CSW01_04175 0.11 -0.1 862,244 - CSW01_04175 0.12 -0.1 862,265 - CSW01_04175 0.14 +0.7 862,279 - CSW01_04175 0.14 -0.5 862,306 + CSW01_04175 0.16 -0.2 862,321 - CSW01_04175 0.17 -0.4 862,357 - CSW01_04175 0.19 -0.3 862,376 + CSW01_04175 0.20 -2.0 862,384 - CSW01_04175 0.20 +0.5 862,384 - CSW01_04175 0.20 -0.2 862,599 - CSW01_04175 0.32 +0.0 862,630 + CSW01_04175 0.34 +0.1 862,630 + CSW01_04175 0.34 -1.1 862,630 + CSW01_04175 0.34 +0.5 862,671 + CSW01_04175 0.36 -0.8 862,714 + CSW01_04175 0.39 +1.8 862,723 - CSW01_04175 0.39 +1.9 862,728 + CSW01_04175 0.40 -1.7 862,736 - CSW01_04175 0.40 -1.0 862,736 - CSW01_04175 0.40 +0.0 862,760 + CSW01_04175 0.41 -0.3 862,760 + CSW01_04175 0.41 +0.4 862,793 + CSW01_04175 0.43 +0.2 862,880 + CSW01_04175 0.48 +1.0
Or see this region's nucleotide sequence