Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04165

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04160 and CSW01_04165 are separated by 67 nucleotidesCSW01_04165 and CSW01_04170 overlap by 29 nucleotidesCSW01_04170 and CSW01_04175 are separated by 8 nucleotides CSW01_04160: CSW01_04160 - NAD(P)/FAD-dependent oxidoreductase, at 859,526 to 861,142 _04160 CSW01_04165: CSW01_04165 - MFS transporter, at 861,210 to 861,893 _04165 CSW01_04170: CSW01_04170 - hypothetical protein, at 861,865 to 862,017 _04170 CSW01_04175: CSW01_04175 - SWIM zinc finger domain-containing protein, at 862,026 to 863,795 _04175 Position (kb) 861 862Strain fitness (log2 ratio) -2 -1 0 1 2 3at 860.256 kb on + strand, within CSW01_04160at 860.256 kb on + strand, within CSW01_04160at 860.272 kb on - strand, within CSW01_04160at 860.324 kb on + strand, within CSW01_04160at 860.339 kb on - strand, within CSW01_04160at 860.464 kb on - strand, within CSW01_04160at 860.510 kb on + strand, within CSW01_04160at 860.510 kb on + strand, within CSW01_04160at 860.517 kb on + strand, within CSW01_04160at 860.546 kb on - strand, within CSW01_04160at 860.546 kb on - strand, within CSW01_04160at 860.600 kb on - strand, within CSW01_04160at 860.630 kb on + strand, within CSW01_04160at 860.641 kb on + strand, within CSW01_04160at 860.651 kb on + strand, within CSW01_04160at 860.664 kb on - strand, within CSW01_04160at 860.715 kb on + strand, within CSW01_04160at 860.723 kb on - strand, within CSW01_04160at 860.723 kb on - strand, within CSW01_04160at 860.777 kb on + strand, within CSW01_04160at 860.786 kb on - strand, within CSW01_04160at 860.799 kb on + strand, within CSW01_04160at 860.853 kb on - strand, within CSW01_04160at 860.855 kb on + strand, within CSW01_04160at 861.013 kb on + strandat 861.020 kb on + strandat 861.022 kb on + strandat 861.049 kb on - strandat 861.049 kb on - strandat 861.057 kb on + strandat 861.121 kb on + strandat 861.177 kb on - strandat 861.177 kb on - strandat 861.262 kb on + strandat 861.327 kb on + strand, within CSW01_04165at 861.411 kb on + strand, within CSW01_04165at 861.454 kb on + strand, within CSW01_04165at 861.497 kb on - strand, within CSW01_04165at 861.511 kb on + strand, within CSW01_04165at 861.513 kb on + strand, within CSW01_04165at 861.516 kb on - strand, within CSW01_04165at 861.640 kb on + strand, within CSW01_04165at 861.761 kb on + strand, within CSW01_04165at 861.767 kb on + strand, within CSW01_04165at 861.792 kb on + strand, within CSW01_04165at 861.796 kb on + strand, within CSW01_04165at 861.858 kb on - strandat 861.860 kb on + strandat 861.868 kb on - strandat 861.948 kb on - strand, within CSW01_04170at 861.952 kb on - strand, within CSW01_04170at 861.973 kb on + strand, within CSW01_04170at 861.989 kb on + strand, within CSW01_04170at 861.997 kb on - strand, within CSW01_04170at 862.023 kb on + strandat 862.152 kb on - strandat 862.161 kb on - strandat 862.163 kb on + strandat 862.197 kb on - strandat 862.223 kb on + strand, within CSW01_04175at 862.244 kb on - strand, within CSW01_04175at 862.265 kb on - strand, within CSW01_04175at 862.279 kb on - strand, within CSW01_04175at 862.306 kb on + strand, within CSW01_04175at 862.321 kb on - strand, within CSW01_04175at 862.357 kb on - strand, within CSW01_04175at 862.376 kb on + strand, within CSW01_04175at 862.384 kb on - strand, within CSW01_04175at 862.384 kb on - strand, within CSW01_04175at 862.599 kb on - strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.671 kb on + strand, within CSW01_04175at 862.714 kb on + strand, within CSW01_04175at 862.723 kb on - strand, within CSW01_04175at 862.728 kb on + strand, within CSW01_04175at 862.736 kb on - strand, within CSW01_04175at 862.736 kb on - strand, within CSW01_04175at 862.760 kb on + strand, within CSW01_04175at 862.760 kb on + strand, within CSW01_04175at 862.793 kb on + strand, within CSW01_04175at 862.880 kb on + strand, within CSW01_04175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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860,256 + CSW01_04160 0.45 -0.7
860,256 + CSW01_04160 0.45 +3.4
860,272 - CSW01_04160 0.46 +0.3
860,324 + CSW01_04160 0.49 -0.6
860,339 - CSW01_04160 0.50 -0.5
860,464 - CSW01_04160 0.58 +1.0
860,510 + CSW01_04160 0.61 -0.5
860,510 + CSW01_04160 0.61 +0.4
860,517 + CSW01_04160 0.61 +0.5
860,546 - CSW01_04160 0.63 +1.0
860,546 - CSW01_04160 0.63 -1.2
860,600 - CSW01_04160 0.66 -0.1
860,630 + CSW01_04160 0.68 -0.1
860,641 + CSW01_04160 0.69 -0.1
860,651 + CSW01_04160 0.70 -0.3
860,664 - CSW01_04160 0.70 +0.4
860,715 + CSW01_04160 0.74 +0.2
860,723 - CSW01_04160 0.74 -2.2
860,723 - CSW01_04160 0.74 +0.1
860,777 + CSW01_04160 0.77 +0.4
860,786 - CSW01_04160 0.78 +0.7
860,799 + CSW01_04160 0.79 +0.7
860,853 - CSW01_04160 0.82 -0.2
860,855 + CSW01_04160 0.82 -0.3
861,013 + +0.3
861,020 + -0.6
861,022 + +0.5
861,049 - -0.8
861,049 - +0.2
861,057 + -1.2
861,121 + +0.6
861,177 - +1.2
861,177 - +0.2
861,262 + +0.6
861,327 + CSW01_04165 0.17 -0.3
861,411 + CSW01_04165 0.29 +0.2
861,454 + CSW01_04165 0.36 +0.8
861,497 - CSW01_04165 0.42 +1.1
861,511 + CSW01_04165 0.44 +0.1
861,513 + CSW01_04165 0.44 -0.2
861,516 - CSW01_04165 0.45 -0.2
861,640 + CSW01_04165 0.63 -0.6
861,761 + CSW01_04165 0.81 -0.1
861,767 + CSW01_04165 0.81 +0.4
861,792 + CSW01_04165 0.85 +1.3
861,796 + CSW01_04165 0.86 +0.1
861,858 - +0.3
861,860 + +0.5
861,868 - +0.3
861,948 - CSW01_04170 0.54 -0.3
861,952 - CSW01_04170 0.57 +0.1
861,973 + CSW01_04170 0.71 -0.4
861,989 + CSW01_04170 0.81 -0.2
861,997 - CSW01_04170 0.86 -0.4
862,023 + +0.6
862,152 - -0.1
862,161 - +0.0
862,163 + -1.0
862,197 - +0.1
862,223 + CSW01_04175 0.11 -0.1
862,244 - CSW01_04175 0.12 -0.1
862,265 - CSW01_04175 0.14 +0.7
862,279 - CSW01_04175 0.14 -0.5
862,306 + CSW01_04175 0.16 -0.2
862,321 - CSW01_04175 0.17 -0.4
862,357 - CSW01_04175 0.19 -0.3
862,376 + CSW01_04175 0.20 -2.0
862,384 - CSW01_04175 0.20 +0.5
862,384 - CSW01_04175 0.20 -0.2
862,599 - CSW01_04175 0.32 +0.0
862,630 + CSW01_04175 0.34 +0.1
862,630 + CSW01_04175 0.34 -1.1
862,630 + CSW01_04175 0.34 +0.5
862,671 + CSW01_04175 0.36 -0.8
862,714 + CSW01_04175 0.39 +1.8
862,723 - CSW01_04175 0.39 +1.9
862,728 + CSW01_04175 0.40 -1.7
862,736 - CSW01_04175 0.40 -1.0
862,736 - CSW01_04175 0.40 +0.0
862,760 + CSW01_04175 0.41 -0.3
862,760 + CSW01_04175 0.41 +0.4
862,793 + CSW01_04175 0.43 +0.2
862,880 + CSW01_04175 0.48 +1.0

Or see this region's nucleotide sequence