Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04015

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04010 and CSW01_04015 are separated by 167 nucleotidesCSW01_04015 and CSW01_04020 are separated by 11 nucleotides CSW01_04010: CSW01_04010 - vibriobactin biosynthesis isochorismate synthase, at 827,568 to 828,755 _04010 CSW01_04015: CSW01_04015 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 828,923 to 829,711 _04015 CSW01_04020: CSW01_04020 - vibriobactin biosynthesis amide synthase VibH, at 829,723 to 831,039 _04020 Position (kb) 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 827.930 kb on + strand, within CSW01_04010at 827.930 kb on + strand, within CSW01_04010at 827.932 kb on + strand, within CSW01_04010at 827.938 kb on - strand, within CSW01_04010at 827.940 kb on + strand, within CSW01_04010at 827.940 kb on - strand, within CSW01_04010at 827.948 kb on - strand, within CSW01_04010at 827.948 kb on - strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.993 kb on - strand, within CSW01_04010at 828.072 kb on - strand, within CSW01_04010at 828.072 kb on - strand, within CSW01_04010at 828.074 kb on - strand, within CSW01_04010at 828.145 kb on - strand, within CSW01_04010at 828.168 kb on + strand, within CSW01_04010at 828.176 kb on + strand, within CSW01_04010at 828.217 kb on - strand, within CSW01_04010at 828.242 kb on + strand, within CSW01_04010at 828.270 kb on + strand, within CSW01_04010at 828.278 kb on + strand, within CSW01_04010at 828.285 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.343 kb on - strand, within CSW01_04010at 828.343 kb on - strand, within CSW01_04010at 828.365 kb on + strand, within CSW01_04010at 828.365 kb on + strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.444 kb on + strand, within CSW01_04010at 828.444 kb on + strand, within CSW01_04010at 828.452 kb on - strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.523 kb on + strand, within CSW01_04010at 828.531 kb on - strand, within CSW01_04010at 828.541 kb on - strand, within CSW01_04010at 828.541 kb on - strand, within CSW01_04010at 828.564 kb on - strand, within CSW01_04010at 828.586 kb on - strand, within CSW01_04010at 828.635 kb on + strand, within CSW01_04010at 828.645 kb on - strandat 828.692 kb on + strandat 828.752 kb on - strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.986 kb on - strandat 828.986 kb on - strandat 828.986 kb on - strandat 829.119 kb on + strand, within CSW01_04015at 829.127 kb on - strand, within CSW01_04015at 829.137 kb on - strand, within CSW01_04015at 829.137 kb on - strand, within CSW01_04015at 829.169 kb on - strand, within CSW01_04015at 829.192 kb on + strand, within CSW01_04015at 829.283 kb on - strand, within CSW01_04015at 829.283 kb on - strand, within CSW01_04015at 829.301 kb on - strand, within CSW01_04015at 829.330 kb on + strand, within CSW01_04015at 829.333 kb on + strand, within CSW01_04015at 829.338 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.364 kb on + strand, within CSW01_04015at 829.439 kb on + strand, within CSW01_04015at 829.440 kb on - strand, within CSW01_04015at 829.447 kb on - strand, within CSW01_04015at 829.490 kb on - strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.526 kb on + strand, within CSW01_04015at 829.526 kb on + strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.663 kb on - strandat 829.763 kb on + strandat 829.763 kb on + strandat 829.775 kb on + strandat 829.785 kb on + strandat 829.885 kb on + strand, within CSW01_04020at 829.893 kb on - strand, within CSW01_04020at 829.893 kb on - strand, within CSW01_04020at 829.961 kb on - strand, within CSW01_04020at 829.964 kb on + strand, within CSW01_04020at 829.984 kb on - strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.153 kb on - strand, within CSW01_04020at 830.153 kb on - strand, within CSW01_04020at 830.153 kb on - strand, within CSW01_04020at 830.208 kb on + strand, within CSW01_04020at 830.231 kb on - strand, within CSW01_04020at 830.265 kb on - strand, within CSW01_04020at 830.290 kb on - strand, within CSW01_04020at 830.304 kb on - strand, within CSW01_04020at 830.383 kb on + strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.443 kb on + strand, within CSW01_04020at 830.448 kb on + strand, within CSW01_04020at 830.448 kb on + strand, within CSW01_04020at 830.451 kb on - strand, within CSW01_04020at 830.451 kb on - strand, within CSW01_04020at 830.488 kb on + strand, within CSW01_04020at 830.496 kb on - strand, within CSW01_04020at 830.555 kb on + strand, within CSW01_04020at 830.556 kb on - strand, within CSW01_04020at 830.636 kb on - strand, within CSW01_04020at 830.657 kb on - strand, within CSW01_04020at 830.668 kb on + strand, within CSW01_04020at 830.668 kb on + strand, within CSW01_04020at 830.679 kb on + strand, within CSW01_04020

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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827,930 + CSW01_04010 0.30 +3.4
827,930 + CSW01_04010 0.30 +1.0
827,932 + CSW01_04010 0.31 +1.2
827,938 - CSW01_04010 0.31 -1.6
827,940 + CSW01_04010 0.31 -0.2
827,940 - CSW01_04010 0.31 +2.5
827,948 - CSW01_04010 0.32 -0.3
827,948 - CSW01_04010 0.32 -0.3
827,975 + CSW01_04010 0.34 +0.7
827,975 + CSW01_04010 0.34 +0.7
827,975 + CSW01_04010 0.34 +0.1
827,993 - CSW01_04010 0.36 +0.4
828,072 - CSW01_04010 0.42 -0.8
828,072 - CSW01_04010 0.42 +0.5
828,074 - CSW01_04010 0.43 -1.0
828,145 - CSW01_04010 0.49 +1.5
828,168 + CSW01_04010 0.51 -1.4
828,176 + CSW01_04010 0.51 +0.6
828,217 - CSW01_04010 0.55 +0.5
828,242 + CSW01_04010 0.57 -0.4
828,270 + CSW01_04010 0.59 -0.3
828,278 + CSW01_04010 0.60 +0.1
828,285 + CSW01_04010 0.60 +2.7
828,325 + CSW01_04010 0.64 +1.5
828,325 + CSW01_04010 0.64 +0.1
828,325 + CSW01_04010 0.64 +0.3
828,325 + CSW01_04010 0.64 -0.2
828,325 + CSW01_04010 0.64 +3.0
828,325 + CSW01_04010 0.64 -1.7
828,325 + CSW01_04010 0.64 -2.7
828,325 + CSW01_04010 0.64 -1.1
828,325 + CSW01_04010 0.64 +1.0
828,325 + CSW01_04010 0.64 -0.9
828,325 + CSW01_04010 0.64 +1.7
828,325 + CSW01_04010 0.64 +1.6
828,325 + CSW01_04010 0.64 -0.3
828,325 + CSW01_04010 0.64 -0.5
828,333 - CSW01_04010 0.64 +1.1
828,333 - CSW01_04010 0.64 +0.3
828,333 - CSW01_04010 0.64 +0.7
828,333 - CSW01_04010 0.64 -0.2
828,333 - CSW01_04010 0.64 -0.5
828,333 - CSW01_04010 0.64 +0.1
828,333 - CSW01_04010 0.64 -0.4
828,333 - CSW01_04010 0.64 -0.3
828,333 - CSW01_04010 0.64 -0.0
828,333 - CSW01_04010 0.64 +0.9
828,335 + CSW01_04010 0.65 +0.7
828,335 + CSW01_04010 0.65 +0.9
828,335 + CSW01_04010 0.65 -1.7
828,335 + CSW01_04010 0.65 +0.8
828,335 + CSW01_04010 0.65 -0.1
828,343 - CSW01_04010 0.65 +1.2
828,343 - CSW01_04010 0.65 +0.0
828,365 + CSW01_04010 0.67 +0.9
828,365 + CSW01_04010 0.67 +1.3
828,373 - CSW01_04010 0.68 -0.2
828,373 - CSW01_04010 0.68 +0.4
828,373 - CSW01_04010 0.68 -0.4
828,444 + CSW01_04010 0.74 +0.4
828,444 + CSW01_04010 0.74 -0.7
828,452 - CSW01_04010 0.74 -2.0
828,467 + CSW01_04010 0.76 -1.1
828,467 + CSW01_04010 0.76 -0.6
828,467 + CSW01_04010 0.76 -2.5
828,467 + CSW01_04010 0.76 -1.9
828,467 + CSW01_04010 0.76 -1.4
828,467 + CSW01_04010 0.76 -0.0
828,467 + CSW01_04010 0.76 -1.1
828,467 + CSW01_04010 0.76 +0.1
828,467 + CSW01_04010 0.76 +0.8
828,467 + CSW01_04010 0.76 +0.5
828,467 + CSW01_04010 0.76 -0.4
828,467 + CSW01_04010 0.76 -1.9
828,467 + CSW01_04010 0.76 +0.4
828,467 + CSW01_04010 0.76 -0.3
828,467 + CSW01_04010 0.76 -0.2
828,467 + CSW01_04010 0.76 +0.9
828,467 + CSW01_04010 0.76 +0.7
828,475 - CSW01_04010 0.76 +0.1
828,475 - CSW01_04010 0.76 +0.5
828,475 - CSW01_04010 0.76 +0.1
828,475 - CSW01_04010 0.76 -0.3
828,475 - CSW01_04010 0.76 -0.6
828,475 - CSW01_04010 0.76 +0.7
828,475 - CSW01_04010 0.76 -0.4
828,475 - CSW01_04010 0.76 -1.0
828,475 - CSW01_04010 0.76 -0.1
828,475 - CSW01_04010 0.76 +0.0
828,475 - CSW01_04010 0.76 -0.4
828,475 - CSW01_04010 0.76 +0.3
828,523 + CSW01_04010 0.80 +0.4
828,531 - CSW01_04010 0.81 -0.8
828,541 - CSW01_04010 0.82 -0.2
828,541 - CSW01_04010 0.82 +0.0
828,564 - CSW01_04010 0.84 -0.1
828,586 - CSW01_04010 0.86 -0.0
828,635 + CSW01_04010 0.90 +0.2
828,645 - -0.3
828,692 + -0.0
828,752 - -0.3
828,978 + -0.4
828,978 + -0.1
828,978 + -0.4
828,978 + +1.0
828,978 + +0.4
828,978 + +0.2
828,986 - +0.2
828,986 - -0.5
828,986 - +0.4
829,119 + CSW01_04015 0.25 +0.2
829,127 - CSW01_04015 0.26 -1.8
829,137 - CSW01_04015 0.27 -0.7
829,137 - CSW01_04015 0.27 -0.3
829,169 - CSW01_04015 0.31 -0.4
829,192 + CSW01_04015 0.34 -0.1
829,283 - CSW01_04015 0.46 -0.7
829,283 - CSW01_04015 0.46 -0.4
829,301 - CSW01_04015 0.48 -0.1
829,330 + CSW01_04015 0.52 +0.7
829,333 + CSW01_04015 0.52 -3.1
829,338 - CSW01_04015 0.53 -0.2
829,362 - CSW01_04015 0.56 -0.7
829,362 - CSW01_04015 0.56 -0.3
829,362 - CSW01_04015 0.56 +0.1
829,364 + CSW01_04015 0.56 +0.2
829,439 + CSW01_04015 0.65 -1.1
829,440 - CSW01_04015 0.66 -0.4
829,447 - CSW01_04015 0.66 -0.5
829,490 - CSW01_04015 0.72 +0.4
829,516 + CSW01_04015 0.75 +1.3
829,516 + CSW01_04015 0.75 -0.9
829,516 + CSW01_04015 0.75 -1.1
829,516 + CSW01_04015 0.75 -2.1
829,516 + CSW01_04015 0.75 +0.0
829,516 + CSW01_04015 0.75 -0.3
829,516 + CSW01_04015 0.75 -0.6
829,516 + CSW01_04015 0.75 +0.3
829,516 + CSW01_04015 0.75 +0.9
829,516 + CSW01_04015 0.75 +0.5
829,524 - CSW01_04015 0.76 -0.9
829,524 - CSW01_04015 0.76 +0.0
829,524 - CSW01_04015 0.76 +1.2
829,524 - CSW01_04015 0.76 +0.2
829,524 - CSW01_04015 0.76 -0.2
829,524 - CSW01_04015 0.76 +0.0
829,524 - CSW01_04015 0.76 -1.0
829,524 - CSW01_04015 0.76 -0.4
829,524 - CSW01_04015 0.76 -0.6
829,526 + CSW01_04015 0.76 +0.2
829,526 + CSW01_04015 0.76 +0.1
829,534 - CSW01_04015 0.77 +0.1
829,534 - CSW01_04015 0.77 -1.4
829,534 - CSW01_04015 0.77 +0.1
829,663 - +0.8
829,763 + -2.1
829,763 + -2.0
829,775 + -1.0
829,785 + +0.0
829,885 + CSW01_04020 0.12 +1.6
829,893 - CSW01_04020 0.13 +0.8
829,893 - CSW01_04020 0.13 +0.8
829,961 - CSW01_04020 0.18 -0.2
829,964 + CSW01_04020 0.18 -0.4
829,984 - CSW01_04020 0.20 -0.1
830,145 + CSW01_04020 0.32 -0.1
830,145 + CSW01_04020 0.32 +0.3
830,145 + CSW01_04020 0.32 -0.5
830,145 + CSW01_04020 0.32 -0.9
830,145 + CSW01_04020 0.32 +0.5
830,153 - CSW01_04020 0.33 -1.3
830,153 - CSW01_04020 0.33 +1.8
830,153 - CSW01_04020 0.33 -0.1
830,208 + CSW01_04020 0.37 +0.3
830,231 - CSW01_04020 0.39 -0.2
830,265 - CSW01_04020 0.41 +0.3
830,290 - CSW01_04020 0.43 +3.4
830,304 - CSW01_04020 0.44 +1.4
830,383 + CSW01_04020 0.50 -0.2
830,401 - CSW01_04020 0.51 -0.1
830,401 - CSW01_04020 0.51 -0.3
830,401 - CSW01_04020 0.51 +0.4
830,443 + CSW01_04020 0.55 +0.6
830,448 + CSW01_04020 0.55 -0.3
830,448 + CSW01_04020 0.55 +0.9
830,451 - CSW01_04020 0.55 -0.5
830,451 - CSW01_04020 0.55 -0.2
830,488 + CSW01_04020 0.58 +1.0
830,496 - CSW01_04020 0.59 -0.4
830,555 + CSW01_04020 0.63 +0.1
830,556 - CSW01_04020 0.63 -0.1
830,636 - CSW01_04020 0.69 +0.6
830,657 - CSW01_04020 0.71 -0.8
830,668 + CSW01_04020 0.72 +0.1
830,668 + CSW01_04020 0.72 -0.3
830,679 + CSW01_04020 0.73 +0.8

Or see this region's nucleotide sequence