Experiment: LB_Aerobic_60MIN_ZN2B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03920 and CSW01_03925 are separated by 203 nucleotides CSW01_03925 and CSW01_03930 are separated by 173 nucleotides CSW01_03930 and CSW01_03935 are separated by 313 nucleotides
CSW01_03920: CSW01_03920 - peptidase B, at 805,218 to 806,507
_03920
CSW01_03925: CSW01_03925 - nucleoside-diphosphate kinase, at 806,711 to 807,139
_03925
CSW01_03930: CSW01_03930 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 807,313 to 808,434
_03930
CSW01_03935: CSW01_03935 - cytoskeleton protein RodZ, at 808,748 to 809,830
_03935
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 806.336 kb on + strand, within CSW01_03920 at 806.339 kb on - strand, within CSW01_03920 at 806.459 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.590 kb on - strand at 806.633 kb on + strand at 806.654 kb on - strand at 806.752 kb on + strand at 807.056 kb on + strand, within CSW01_03925 at 807.139 kb on - strand at 807.139 kb on - strand at 807.141 kb on + strand at 807.141 kb on + strand at 807.141 kb on + strand at 807.149 kb on - strand at 807.149 kb on - strand at 807.149 kb on - strand at 807.151 kb on + strand at 807.280 kb on + strand at 807.318 kb on - strand at 807.348 kb on + strand at 807.356 kb on - strand at 807.401 kb on + strand at 807.440 kb on - strand, within CSW01_03930 at 807.525 kb on - strand, within CSW01_03930 at 807.539 kb on + strand, within CSW01_03930 at 807.540 kb on - strand, within CSW01_03930 at 807.585 kb on - strand, within CSW01_03930 at 807.653 kb on - strand, within CSW01_03930 at 807.691 kb on + strand, within CSW01_03930 at 807.698 kb on + strand, within CSW01_03930 at 807.732 kb on + strand, within CSW01_03930 at 807.740 kb on - strand, within CSW01_03930 at 807.748 kb on + strand, within CSW01_03930 at 807.807 kb on + strand, within CSW01_03930 at 807.808 kb on + strand, within CSW01_03930 at 807.821 kb on - strand, within CSW01_03930 at 808.150 kb on - strand, within CSW01_03930 at 808.217 kb on - strand, within CSW01_03930 at 808.217 kb on - strand, within CSW01_03930 at 808.305 kb on - strand, within CSW01_03930 at 808.350 kb on + strand at 808.361 kb on - strand at 808.633 kb on + strand at 808.656 kb on + strand at 808.716 kb on + strand at 809.210 kb on - strand, within CSW01_03935 at 809.210 kb on - strand, within CSW01_03935 at 809.278 kb on - strand, within CSW01_03935 at 809.327 kb on + strand, within CSW01_03935
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B remove 806,336 + CSW01_03920 0.87 -0.6 806,339 - CSW01_03920 0.87 +1.1 806,459 + +1.2 806,550 + +0.3 806,550 + -2.9 806,550 + +0.1 806,550 + -0.2 806,590 - -0.4 806,633 + +0.2 806,654 - +0.9 806,752 + +0.6 807,056 + CSW01_03925 0.80 -0.8 807,139 - -0.8 807,139 - +0.3 807,141 + +1.1 807,141 + +0.5 807,141 + -0.4 807,149 - +0.1 807,149 - +0.6 807,149 - -0.7 807,151 + +0.2 807,280 + -0.5 807,318 - -0.1 807,348 + +1.1 807,356 - -0.3 807,401 + -0.3 807,440 - CSW01_03930 0.11 +0.4 807,525 - CSW01_03930 0.19 -0.3 807,539 + CSW01_03930 0.20 -1.0 807,540 - CSW01_03930 0.20 -2.2 807,585 - CSW01_03930 0.24 -0.7 807,653 - CSW01_03930 0.30 -0.2 807,691 + CSW01_03930 0.34 -0.8 807,698 + CSW01_03930 0.34 +0.3 807,732 + CSW01_03930 0.37 -1.1 807,740 - CSW01_03930 0.38 +0.4 807,748 + CSW01_03930 0.39 -0.4 807,807 + CSW01_03930 0.44 -0.3 807,808 + CSW01_03930 0.44 -0.4 807,821 - CSW01_03930 0.45 -1.1 808,150 - CSW01_03930 0.75 -0.1 808,217 - CSW01_03930 0.81 -0.5 808,217 - CSW01_03930 0.81 +1.1 808,305 - CSW01_03930 0.88 -0.6 808,350 + -0.2 808,361 - +0.1 808,633 + +0.1 808,656 + +0.3 808,716 + -0.6 809,210 - CSW01_03935 0.43 -0.2 809,210 - CSW01_03935 0.43 -0.6 809,278 - CSW01_03935 0.49 +0.7 809,327 + CSW01_03935 0.53 -0.6
Or see this region's nucleotide sequence