Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03230

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03225 and CSW01_03230 are separated by 118 nucleotidesCSW01_03230 and CSW01_03235 overlap by 4 nucleotidesCSW01_03235 and CSW01_03240 overlap by 97 nucleotides CSW01_03225: CSW01_03225 - N,N'-diacetylchitobiose phosphorylase, at 643,093 to 645,498 _03225 CSW01_03230: CSW01_03230 - beta-N-acetylhexosaminidase, at 645,617 to 647,530 _03230 CSW01_03235: CSW01_03235 - N-acetylglucosamine kinase, at 647,527 to 648,504 _03235 CSW01_03240: CSW01_03240 - chitobiase, at 648,408 to 650,132 _03240 Position (kb) 645 646 647 648Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 644.623 kb on - strand, within CSW01_03225at 644.632 kb on + strand, within CSW01_03225at 644.647 kb on + strand, within CSW01_03225at 644.652 kb on + strand, within CSW01_03225at 644.673 kb on + strand, within CSW01_03225at 644.681 kb on - strand, within CSW01_03225at 644.681 kb on - strand, within CSW01_03225at 644.681 kb on - strand, within CSW01_03225at 644.686 kb on + strand, within CSW01_03225at 644.694 kb on - strand, within CSW01_03225at 644.705 kb on - strand, within CSW01_03225at 644.707 kb on - strand, within CSW01_03225at 644.707 kb on - strand, within CSW01_03225at 644.707 kb on - strand, within CSW01_03225at 644.747 kb on + strand, within CSW01_03225at 644.749 kb on + strand, within CSW01_03225at 644.757 kb on + strand, within CSW01_03225at 644.789 kb on + strand, within CSW01_03225at 644.789 kb on + strand, within CSW01_03225at 644.789 kb on + strand, within CSW01_03225at 644.789 kb on + strand, within CSW01_03225at 644.797 kb on - strand, within CSW01_03225at 644.797 kb on - strand, within CSW01_03225at 644.798 kb on - strand, within CSW01_03225at 644.798 kb on - strand, within CSW01_03225at 644.798 kb on - strand, within CSW01_03225at 644.830 kb on - strand, within CSW01_03225at 644.850 kb on + strand, within CSW01_03225at 644.922 kb on + strand, within CSW01_03225at 644.930 kb on + strand, within CSW01_03225at 644.935 kb on - strand, within CSW01_03225at 644.935 kb on - strand, within CSW01_03225at 644.939 kb on + strand, within CSW01_03225at 644.948 kb on - strand, within CSW01_03225at 644.948 kb on - strand, within CSW01_03225at 644.949 kb on - strand, within CSW01_03225at 644.976 kb on + strand, within CSW01_03225at 644.984 kb on - strand, within CSW01_03225at 644.989 kb on - strand, within CSW01_03225at 644.989 kb on - strand, within CSW01_03225at 645.022 kb on - strand, within CSW01_03225at 645.024 kb on + strand, within CSW01_03225at 645.036 kb on + strand, within CSW01_03225at 645.044 kb on + strand, within CSW01_03225at 645.054 kb on + strand, within CSW01_03225at 645.054 kb on - strand, within CSW01_03225at 645.062 kb on - strand, within CSW01_03225at 645.145 kb on - strand, within CSW01_03225at 645.184 kb on + strand, within CSW01_03225at 645.192 kb on - strand, within CSW01_03225at 645.216 kb on + strand, within CSW01_03225at 645.282 kb on + strandat 645.282 kb on + strandat 645.282 kb on + strandat 645.282 kb on + strandat 645.282 kb on + strandat 645.290 kb on - strandat 645.290 kb on - strandat 645.290 kb on - strandat 645.290 kb on - strandat 645.338 kb on + strandat 645.343 kb on + strandat 645.346 kb on - strandat 645.348 kb on - strandat 645.348 kb on - strandat 645.351 kb on - strandat 645.353 kb on - strandat 645.365 kb on + strandat 645.365 kb on + strandat 645.365 kb on + strandat 645.373 kb on - strandat 645.373 kb on - strandat 645.373 kb on - strandat 645.373 kb on - strandat 645.373 kb on - strandat 645.380 kb on - strandat 645.441 kb on + strandat 645.669 kb on - strandat 645.868 kb on + strand, within CSW01_03230at 645.868 kb on + strand, within CSW01_03230at 645.868 kb on + strand, within CSW01_03230at 645.876 kb on - strand, within CSW01_03230at 645.876 kb on - strand, within CSW01_03230at 645.884 kb on - strand, within CSW01_03230at 645.895 kb on + strand, within CSW01_03230at 645.895 kb on - strand, within CSW01_03230at 645.903 kb on - strand, within CSW01_03230at 645.903 kb on - strand, within CSW01_03230at 645.946 kb on - strand, within CSW01_03230at 645.985 kb on + strand, within CSW01_03230at 646.015 kb on - strand, within CSW01_03230at 646.070 kb on + strand, within CSW01_03230at 646.078 kb on - strand, within CSW01_03230at 646.092 kb on + strand, within CSW01_03230at 646.092 kb on + strand, within CSW01_03230at 646.092 kb on + strand, within CSW01_03230at 646.092 kb on + strand, within CSW01_03230at 646.092 kb on + strand, within CSW01_03230at 646.128 kb on + strand, within CSW01_03230at 646.136 kb on - strand, within CSW01_03230at 646.146 kb on - strand, within CSW01_03230at 646.156 kb on + strand, within CSW01_03230at 646.162 kb on + strand, within CSW01_03230at 646.167 kb on + strand, within CSW01_03230at 646.167 kb on + strand, within CSW01_03230at 646.184 kb on + strand, within CSW01_03230at 646.184 kb on + strand, within CSW01_03230at 646.223 kb on + strand, within CSW01_03230at 646.223 kb on + strand, within CSW01_03230at 646.234 kb on + strand, within CSW01_03230at 646.319 kb on - strand, within CSW01_03230at 646.321 kb on + strand, within CSW01_03230at 646.321 kb on + strand, within CSW01_03230at 646.321 kb on + strand, within CSW01_03230at 646.321 kb on + strand, within CSW01_03230at 646.329 kb on - strand, within CSW01_03230at 646.329 kb on - strand, within CSW01_03230at 646.329 kb on - strand, within CSW01_03230at 646.340 kb on + strand, within CSW01_03230at 646.346 kb on + strand, within CSW01_03230at 646.349 kb on + strand, within CSW01_03230at 646.349 kb on + strand, within CSW01_03230at 646.349 kb on + strand, within CSW01_03230at 646.357 kb on - strand, within CSW01_03230at 646.357 kb on - strand, within CSW01_03230at 646.357 kb on - strand, within CSW01_03230at 646.357 kb on - strand, within CSW01_03230at 646.359 kb on - strand, within CSW01_03230at 646.359 kb on - strand, within CSW01_03230at 646.424 kb on + strand, within CSW01_03230at 646.424 kb on + strand, within CSW01_03230at 646.496 kb on + strand, within CSW01_03230at 646.496 kb on + strand, within CSW01_03230at 646.504 kb on - strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.552 kb on - strand, within CSW01_03230at 646.552 kb on - strand, within CSW01_03230at 646.552 kb on - strand, within CSW01_03230at 646.581 kb on + strand, within CSW01_03230at 646.668 kb on - strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.703 kb on - strand, within CSW01_03230at 646.705 kb on + strand, within CSW01_03230at 646.705 kb on + strand, within CSW01_03230at 646.711 kb on - strand, within CSW01_03230at 646.733 kb on + strand, within CSW01_03230at 646.776 kb on + strand, within CSW01_03230at 646.784 kb on - strand, within CSW01_03230at 646.784 kb on - strand, within CSW01_03230at 646.784 kb on - strand, within CSW01_03230at 646.786 kb on + strand, within CSW01_03230at 646.791 kb on - strand, within CSW01_03230at 646.802 kb on + strand, within CSW01_03230at 646.802 kb on + strand, within CSW01_03230at 646.810 kb on - strand, within CSW01_03230at 646.841 kb on + strand, within CSW01_03230at 646.849 kb on - strand, within CSW01_03230at 646.849 kb on - strand, within CSW01_03230at 646.883 kb on + strand, within CSW01_03230at 646.907 kb on + strand, within CSW01_03230at 646.970 kb on - strand, within CSW01_03230at 646.980 kb on - strand, within CSW01_03230at 647.002 kb on + strand, within CSW01_03230at 647.010 kb on - strand, within CSW01_03230at 647.015 kb on - strand, within CSW01_03230at 647.032 kb on + strand, within CSW01_03230at 647.115 kb on + strand, within CSW01_03230at 647.115 kb on + strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.137 kb on + strand, within CSW01_03230at 647.145 kb on - strand, within CSW01_03230at 647.145 kb on - strand, within CSW01_03230at 647.145 kb on - strand, within CSW01_03230at 647.179 kb on + strand, within CSW01_03230at 647.253 kb on - strand, within CSW01_03230at 647.318 kb on - strand, within CSW01_03230at 647.332 kb on - strand, within CSW01_03230at 647.346 kb on - strandat 647.371 kb on + strandat 647.389 kb on - strandat 647.396 kb on - strandat 647.401 kb on - strandat 647.402 kb on - strandat 647.402 kb on - strandat 647.440 kb on + strandat 647.459 kb on + strandat 647.496 kb on + strandat 647.545 kb on - strandat 647.561 kb on - strandat 647.580 kb on - strandat 647.580 kb on - strandat 647.620 kb on - strandat 647.627 kb on + strand, within CSW01_03235at 647.627 kb on + strand, within CSW01_03235at 647.630 kb on + strand, within CSW01_03235at 647.633 kb on - strand, within CSW01_03235at 647.638 kb on - strand, within CSW01_03235at 647.655 kb on + strand, within CSW01_03235at 647.655 kb on - strand, within CSW01_03235at 647.663 kb on - strand, within CSW01_03235at 647.690 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.836 kb on - strand, within CSW01_03235at 647.836 kb on - strand, within CSW01_03235at 647.882 kb on + strand, within CSW01_03235at 647.943 kb on + strand, within CSW01_03235at 647.950 kb on + strand, within CSW01_03235at 647.958 kb on - strand, within CSW01_03235at 647.968 kb on + strand, within CSW01_03235at 648.074 kb on + strand, within CSW01_03235at 648.128 kb on - strand, within CSW01_03235at 648.131 kb on + strand, within CSW01_03235at 648.131 kb on + strand, within CSW01_03235at 648.150 kb on + strand, within CSW01_03235at 648.187 kb on + strand, within CSW01_03235at 648.190 kb on - strand, within CSW01_03235at 648.238 kb on + strand, within CSW01_03235at 648.246 kb on - strand, within CSW01_03235at 648.288 kb on + strand, within CSW01_03235at 648.296 kb on - strand, within CSW01_03235at 648.296 kb on - strand, within CSW01_03235at 648.299 kb on + strand, within CSW01_03235at 648.307 kb on - strand, within CSW01_03235at 648.325 kb on + strand, within CSW01_03235at 648.336 kb on + strand, within CSW01_03235at 648.396 kb on - strand, within CSW01_03235at 648.431 kb on - strandat 648.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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644,623 - CSW01_03225 0.64 -0.0
644,632 + CSW01_03225 0.64 -0.7
644,647 + CSW01_03225 0.65 +0.1
644,652 + CSW01_03225 0.65 +0.0
644,673 + CSW01_03225 0.66 +0.5
644,681 - CSW01_03225 0.66 -0.9
644,681 - CSW01_03225 0.66 +0.1
644,681 - CSW01_03225 0.66 +0.0
644,686 + CSW01_03225 0.66 +0.9
644,694 - CSW01_03225 0.67 +0.6
644,705 - CSW01_03225 0.67 -1.0
644,707 - CSW01_03225 0.67 +0.3
644,707 - CSW01_03225 0.67 -0.2
644,707 - CSW01_03225 0.67 -0.1
644,747 + CSW01_03225 0.69 -1.0
644,749 + CSW01_03225 0.69 +0.3
644,757 + CSW01_03225 0.69 -0.5
644,789 + CSW01_03225 0.70 +0.5
644,789 + CSW01_03225 0.70 -0.0
644,789 + CSW01_03225 0.70 -0.2
644,789 + CSW01_03225 0.70 +0.2
644,797 - CSW01_03225 0.71 -0.5
644,797 - CSW01_03225 0.71 +0.1
644,798 - CSW01_03225 0.71 +0.0
644,798 - CSW01_03225 0.71 -0.0
644,798 - CSW01_03225 0.71 +0.3
644,830 - CSW01_03225 0.72 -1.0
644,850 + CSW01_03225 0.73 +1.4
644,922 + CSW01_03225 0.76 -0.9
644,930 + CSW01_03225 0.76 +0.3
644,935 - CSW01_03225 0.77 +0.5
644,935 - CSW01_03225 0.77 -0.2
644,939 + CSW01_03225 0.77 +0.3
644,948 - CSW01_03225 0.77 -0.3
644,948 - CSW01_03225 0.77 +0.7
644,949 - CSW01_03225 0.77 +0.2
644,976 + CSW01_03225 0.78 +0.1
644,984 - CSW01_03225 0.79 +0.9
644,989 - CSW01_03225 0.79 -0.6
644,989 - CSW01_03225 0.79 +0.1
645,022 - CSW01_03225 0.80 +0.6
645,024 + CSW01_03225 0.80 +0.3
645,036 + CSW01_03225 0.81 +0.5
645,044 + CSW01_03225 0.81 +0.0
645,054 + CSW01_03225 0.82 +1.7
645,054 - CSW01_03225 0.82 +0.4
645,062 - CSW01_03225 0.82 -0.4
645,145 - CSW01_03225 0.85 -0.7
645,184 + CSW01_03225 0.87 -0.2
645,192 - CSW01_03225 0.87 +0.8
645,216 + CSW01_03225 0.88 -0.2
645,282 + -0.8
645,282 + +0.5
645,282 + -1.4
645,282 + -0.3
645,282 + +3.1
645,290 - +0.4
645,290 - -2.5
645,290 - +1.1
645,290 - -2.1
645,338 + +0.5
645,343 + +0.0
645,346 - +0.2
645,348 - -2.0
645,348 - -0.2
645,351 - +0.4
645,353 - -0.7
645,365 + -1.7
645,365 + -0.5
645,365 + +0.4
645,373 - +0.2
645,373 - +0.3
645,373 - -1.7
645,373 - +0.0
645,373 - +0.5
645,380 - +0.0
645,441 + -1.6
645,669 - +0.7
645,868 + CSW01_03230 0.13 +0.2
645,868 + CSW01_03230 0.13 -2.9
645,868 + CSW01_03230 0.13 -0.5
645,876 - CSW01_03230 0.14 -0.6
645,876 - CSW01_03230 0.14 +0.3
645,884 - CSW01_03230 0.14 +0.5
645,895 + CSW01_03230 0.15 +0.3
645,895 - CSW01_03230 0.15 -0.4
645,903 - CSW01_03230 0.15 -0.9
645,903 - CSW01_03230 0.15 -3.3
645,946 - CSW01_03230 0.17 -0.0
645,985 + CSW01_03230 0.19 +0.9
646,015 - CSW01_03230 0.21 -1.8
646,070 + CSW01_03230 0.24 -0.0
646,078 - CSW01_03230 0.24 +0.2
646,092 + CSW01_03230 0.25 -2.3
646,092 + CSW01_03230 0.25 -0.2
646,092 + CSW01_03230 0.25 -1.2
646,092 + CSW01_03230 0.25 +0.5
646,092 + CSW01_03230 0.25 +0.8
646,128 + CSW01_03230 0.27 -0.8
646,136 - CSW01_03230 0.27 +0.0
646,146 - CSW01_03230 0.28 +0.1
646,156 + CSW01_03230 0.28 +0.3
646,162 + CSW01_03230 0.28 +0.6
646,167 + CSW01_03230 0.29 -2.3
646,167 + CSW01_03230 0.29 +0.3
646,184 + CSW01_03230 0.30 +0.2
646,184 + CSW01_03230 0.30 +0.2
646,223 + CSW01_03230 0.32 -1.5
646,223 + CSW01_03230 0.32 +0.6
646,234 + CSW01_03230 0.32 -0.2
646,319 - CSW01_03230 0.37 +0.5
646,321 + CSW01_03230 0.37 +0.6
646,321 + CSW01_03230 0.37 -0.1
646,321 + CSW01_03230 0.37 -0.0
646,321 + CSW01_03230 0.37 -0.2
646,329 - CSW01_03230 0.37 +0.3
646,329 - CSW01_03230 0.37 +0.7
646,329 - CSW01_03230 0.37 +2.5
646,340 + CSW01_03230 0.38 -1.8
646,346 + CSW01_03230 0.38 +0.4
646,349 + CSW01_03230 0.38 +0.6
646,349 + CSW01_03230 0.38 +0.4
646,349 + CSW01_03230 0.38 -0.7
646,357 - CSW01_03230 0.39 -0.1
646,357 - CSW01_03230 0.39 -1.3
646,357 - CSW01_03230 0.39 +0.6
646,357 - CSW01_03230 0.39 -0.3
646,359 - CSW01_03230 0.39 +0.3
646,359 - CSW01_03230 0.39 +0.4
646,424 + CSW01_03230 0.42 -2.6
646,424 + CSW01_03230 0.42 -1.2
646,496 + CSW01_03230 0.46 +0.4
646,496 + CSW01_03230 0.46 -0.7
646,504 - CSW01_03230 0.46 -0.2
646,544 + CSW01_03230 0.48 +1.1
646,544 + CSW01_03230 0.48 +0.3
646,544 + CSW01_03230 0.48 -0.8
646,544 + CSW01_03230 0.48 +0.5
646,552 - CSW01_03230 0.49 +0.4
646,552 - CSW01_03230 0.49 +0.7
646,552 - CSW01_03230 0.49 -0.6
646,581 + CSW01_03230 0.50 -1.8
646,668 - CSW01_03230 0.55 -0.1
646,695 + CSW01_03230 0.56 +0.2
646,695 + CSW01_03230 0.56 +0.1
646,695 + CSW01_03230 0.56 +0.4
646,695 + CSW01_03230 0.56 +0.6
646,695 + CSW01_03230 0.56 -1.7
646,695 + CSW01_03230 0.56 +0.2
646,703 - CSW01_03230 0.57 +1.2
646,705 + CSW01_03230 0.57 +0.5
646,705 + CSW01_03230 0.57 -2.5
646,711 - CSW01_03230 0.57 -0.3
646,733 + CSW01_03230 0.58 -1.4
646,776 + CSW01_03230 0.61 +0.5
646,784 - CSW01_03230 0.61 -3.3
646,784 - CSW01_03230 0.61 +0.0
646,784 - CSW01_03230 0.61 -0.5
646,786 + CSW01_03230 0.61 +0.2
646,791 - CSW01_03230 0.61 -1.9
646,802 + CSW01_03230 0.62 -0.0
646,802 + CSW01_03230 0.62 +0.0
646,810 - CSW01_03230 0.62 -0.3
646,841 + CSW01_03230 0.64 +0.5
646,849 - CSW01_03230 0.64 +0.3
646,849 - CSW01_03230 0.64 +0.5
646,883 + CSW01_03230 0.66 -1.6
646,907 + CSW01_03230 0.67 +0.0
646,970 - CSW01_03230 0.71 +0.2
646,980 - CSW01_03230 0.71 -0.2
647,002 + CSW01_03230 0.72 -1.8
647,010 - CSW01_03230 0.73 -0.3
647,015 - CSW01_03230 0.73 +1.1
647,032 + CSW01_03230 0.74 +1.4
647,115 + CSW01_03230 0.78 -0.7
647,115 + CSW01_03230 0.78 -0.6
647,123 - CSW01_03230 0.79 -0.6
647,123 - CSW01_03230 0.79 +1.0
647,123 - CSW01_03230 0.79 -0.5
647,123 - CSW01_03230 0.79 +0.4
647,137 + CSW01_03230 0.79 +1.4
647,145 - CSW01_03230 0.80 -0.4
647,145 - CSW01_03230 0.80 -0.3
647,145 - CSW01_03230 0.80 +0.2
647,179 + CSW01_03230 0.82 -0.0
647,253 - CSW01_03230 0.85 +0.6
647,318 - CSW01_03230 0.89 +1.0
647,332 - CSW01_03230 0.90 -1.1
647,346 - +1.2
647,371 + -0.1
647,389 - +0.6
647,396 - -1.6
647,401 - -1.5
647,402 - +0.3
647,402 - -1.5
647,440 + -1.4
647,459 + -0.7
647,496 + +0.2
647,545 - -1.7
647,561 - -0.7
647,580 - -0.9
647,580 - +1.0
647,620 - -0.3
647,627 + CSW01_03235 0.10 +0.3
647,627 + CSW01_03235 0.10 +0.1
647,630 + CSW01_03235 0.11 -0.3
647,633 - CSW01_03235 0.11 -0.3
647,638 - CSW01_03235 0.11 -3.5
647,655 + CSW01_03235 0.13 -1.0
647,655 - CSW01_03235 0.13 -1.2
647,663 - CSW01_03235 0.14 -1.0
647,690 + CSW01_03235 0.17 -1.3
647,828 + CSW01_03235 0.31 +1.2
647,828 + CSW01_03235 0.31 -0.1
647,828 + CSW01_03235 0.31 -2.5
647,828 + CSW01_03235 0.31 -0.2
647,828 + CSW01_03235 0.31 +0.2
647,836 - CSW01_03235 0.32 +0.1
647,836 - CSW01_03235 0.32 -0.5
647,882 + CSW01_03235 0.36 +4.8
647,943 + CSW01_03235 0.43 -0.7
647,950 + CSW01_03235 0.43 -0.7
647,958 - CSW01_03235 0.44 -0.0
647,968 + CSW01_03235 0.45 -0.2
648,074 + CSW01_03235 0.56 +1.1
648,128 - CSW01_03235 0.61 -0.1
648,131 + CSW01_03235 0.62 +0.1
648,131 + CSW01_03235 0.62 +0.1
648,150 + CSW01_03235 0.64 +0.4
648,187 + CSW01_03235 0.67 -0.2
648,190 - CSW01_03235 0.68 +0.2
648,238 + CSW01_03235 0.73 -0.7
648,246 - CSW01_03235 0.74 +1.5
648,288 + CSW01_03235 0.78 -1.8
648,296 - CSW01_03235 0.79 -0.2
648,296 - CSW01_03235 0.79 -1.0
648,299 + CSW01_03235 0.79 +0.0
648,307 - CSW01_03235 0.80 -1.5
648,325 + CSW01_03235 0.82 +1.0
648,336 + CSW01_03235 0.83 +0.2
648,396 - CSW01_03235 0.89 +0.2
648,431 - -0.4
648,502 - +0.1

Or see this region's nucleotide sequence