Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02240

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02235 and CSW01_02240 are separated by 68 nucleotidesCSW01_02240 and CSW01_02245 are separated by 150 nucleotidesCSW01_02245 and CSW01_02250 are separated by 121 nucleotides CSW01_02235: CSW01_02235 - hypothetical protein, at 454,200 to 454,997 _02235 CSW01_02240: CSW01_02240 - DUF2061 domain-containing protein, at 455,066 to 455,449 _02240 CSW01_02245: CSW01_02245 - universal stress protein, at 455,600 to 456,037 _02245 CSW01_02250: CSW01_02250 - DUF3394 domain-containing protein, at 456,159 to 458,723 _02250 Position (kb) 455 456Strain fitness (log2 ratio) -2 -1 0 1at 454.163 kb on + strandat 454.171 kb on - strandat 454.171 kb on - strandat 454.205 kb on - strandat 454.274 kb on - strandat 454.309 kb on - strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.439 kb on - strand, within CSW01_02235at 454.457 kb on + strand, within CSW01_02235at 454.526 kb on - strand, within CSW01_02235at 454.573 kb on + strand, within CSW01_02235at 454.606 kb on + strand, within CSW01_02235at 454.614 kb on - strand, within CSW01_02235at 454.621 kb on + strand, within CSW01_02235at 454.629 kb on - strand, within CSW01_02235at 454.629 kb on - strand, within CSW01_02235at 454.652 kb on + strand, within CSW01_02235at 454.699 kb on - strand, within CSW01_02235at 454.699 kb on - strand, within CSW01_02235at 454.767 kb on + strand, within CSW01_02235at 454.937 kb on + strandat 454.937 kb on + strandat 454.937 kb on + strandat 454.937 kb on + strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.964 kb on - strandat 454.964 kb on - strandat 454.975 kb on + strandat 455.063 kb on + strandat 455.078 kb on + strandat 455.084 kb on - strandat 455.147 kb on + strand, within CSW01_02240at 455.276 kb on + strand, within CSW01_02240at 455.284 kb on - strand, within CSW01_02240at 455.284 kb on - strand, within CSW01_02240at 455.328 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.343 kb on - strand, within CSW01_02240at 455.343 kb on - strand, within CSW01_02240at 455.386 kb on + strand, within CSW01_02240at 455.425 kb on - strandat 455.459 kb on - strandat 455.603 kb on + strandat 455.603 kb on + strandat 455.667 kb on - strand, within CSW01_02245at 455.693 kb on + strand, within CSW01_02245at 455.749 kb on + strand, within CSW01_02245at 455.789 kb on + strand, within CSW01_02245at 455.834 kb on - strand, within CSW01_02245at 455.993 kb on + strand, within CSW01_02245at 456.001 kb on - strandat 456.001 kb on - strandat 456.044 kb on + strandat 456.044 kb on + strandat 456.044 kb on + strandat 456.050 kb on + strandat 456.050 kb on + strandat 456.077 kb on + strandat 456.116 kb on + strandat 456.124 kb on - strandat 456.197 kb on + strandat 456.253 kb on + strandat 456.266 kb on - strandat 456.362 kb on + strandat 456.362 kb on + strandat 456.362 kb on + strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.439 kb on - strand, within CSW01_02250at 456.441 kb on + strand, within CSW01_02250at 456.441 kb on + strand, within CSW01_02250at 456.449 kb on - strand, within CSW01_02250at 456.449 kb on - strand, within CSW01_02250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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454,163 + +0.7
454,171 - +0.7
454,171 - -0.1
454,205 - -1.2
454,274 - +0.7
454,309 - CSW01_02235 0.14 +0.8
454,357 + CSW01_02235 0.20 -0.2
454,357 + CSW01_02235 0.20 -0.6
454,357 + CSW01_02235 0.20 +0.0
454,357 + CSW01_02235 0.20 +0.7
454,365 - CSW01_02235 0.21 -1.4
454,365 - CSW01_02235 0.21 -1.4
454,365 - CSW01_02235 0.21 -0.1
454,365 - CSW01_02235 0.21 +0.6
454,439 - CSW01_02235 0.30 -0.2
454,457 + CSW01_02235 0.32 +0.3
454,526 - CSW01_02235 0.41 +0.3
454,573 + CSW01_02235 0.47 +0.0
454,606 + CSW01_02235 0.51 +0.6
454,614 - CSW01_02235 0.52 -0.2
454,621 + CSW01_02235 0.53 -0.2
454,629 - CSW01_02235 0.54 -0.5
454,629 - CSW01_02235 0.54 +0.6
454,652 + CSW01_02235 0.57 -2.5
454,699 - CSW01_02235 0.63 +0.3
454,699 - CSW01_02235 0.63 +0.1
454,767 + CSW01_02235 0.71 -0.1
454,937 + -1.0
454,937 + -0.5
454,937 + +0.7
454,937 + -0.2
454,945 - -0.5
454,945 - -0.5
454,945 - -0.6
454,945 - +0.6
454,964 - +0.7
454,964 - -0.1
454,975 + -1.0
455,063 + -0.0
455,078 + -0.6
455,084 - -2.6
455,147 + CSW01_02240 0.21 -0.6
455,276 + CSW01_02240 0.55 -0.4
455,284 - CSW01_02240 0.57 +0.2
455,284 - CSW01_02240 0.57 -1.9
455,328 + CSW01_02240 0.68 -0.1
455,335 + CSW01_02240 0.70 +0.7
455,335 + CSW01_02240 0.70 -0.6
455,335 + CSW01_02240 0.70 +0.3
455,335 + CSW01_02240 0.70 -1.0
455,343 - CSW01_02240 0.72 -0.4
455,343 - CSW01_02240 0.72 +1.5
455,386 + CSW01_02240 0.83 -0.2
455,425 - -0.4
455,459 - +0.0
455,603 + +0.3
455,603 + +0.1
455,667 - CSW01_02245 0.15 +0.2
455,693 + CSW01_02245 0.21 -0.5
455,749 + CSW01_02245 0.34 -1.5
455,789 + CSW01_02245 0.43 -0.1
455,834 - CSW01_02245 0.53 -1.3
455,993 + CSW01_02245 0.90 -0.9
456,001 - +0.8
456,001 - -0.6
456,044 + -0.4
456,044 + -0.6
456,044 + -0.2
456,050 + -0.8
456,050 + +0.3
456,077 + -2.7
456,116 + -0.6
456,124 - -0.7
456,197 + +0.2
456,253 + -0.8
456,266 - -0.3
456,362 + +1.1
456,362 + +1.2
456,362 + -0.3
456,370 - +1.3
456,370 - -0.7
456,370 - -0.3
456,370 - +0.6
456,370 - +1.3
456,370 - +0.3
456,439 - CSW01_02250 0.11 +1.6
456,441 + CSW01_02250 0.11 +0.5
456,441 + CSW01_02250 0.11 +0.9
456,449 - CSW01_02250 0.11 +0.2
456,449 - CSW01_02250 0.11 +0.2

Or see this region's nucleotide sequence