Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00040

Experiment: LB_Aerobic_60MIN_ZN2B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00020 and CSW01_00025 are separated by 2 nucleotidesCSW01_00025 and CSW01_00030 overlap by 34 nucleotidesCSW01_00030 and CSW01_00035 are separated by 12 nucleotidesCSW01_00035 and CSW01_00040 are separated by 241 nucleotidesCSW01_00040 and CSW01_00045 overlap by 4 nucleotidesCSW01_00045 and CSW01_00050 are separated by 77 nucleotides CSW01_00020: CSW01_00020 - membrane protein insertase YidC, at 2,271 to 3,896 _00020 CSW01_00025: CSW01_00025 - membrane protein insertion efficiency factor YidD, at 3,899 to 4,156 _00025 CSW01_00030: CSW01_00030 - ribonuclease P protein component, at 4,123 to 4,479 _00030 CSW01_00035: CSW01_00035 - 50S ribosomal protein L34, at 4,492 to 4,629 _00035 CSW01_00040: CSW01_00040 - amino acid ABC transporter ATP-binding protein, at 4,871 to 5,608 _00040 CSW01_00045: CSW01_00045 - amino acid ABC transporter permease, at 5,605 to 6,276 _00045 CSW01_00050: CSW01_00050 - amino acid ABC transporter substrate-binding protein, at 6,354 to 7,100 _00050 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4.097 kb on + strand, within CSW01_00025at 4.123 kb on - strandat 4.761 kb on - strandat 4.768 kb on + strandat 4.778 kb on + strandat 4.869 kb on + strandat 4.937 kb on - strandat 4.947 kb on - strand, within CSW01_00040at 4.949 kb on - strand, within CSW01_00040at 4.955 kb on - strand, within CSW01_00040at 5.036 kb on + strand, within CSW01_00040at 5.069 kb on + strand, within CSW01_00040at 5.077 kb on - strand, within CSW01_00040at 5.077 kb on - strand, within CSW01_00040at 5.079 kb on + strand, within CSW01_00040at 5.092 kb on - strand, within CSW01_00040at 5.168 kb on - strand, within CSW01_00040at 5.169 kb on - strand, within CSW01_00040at 5.181 kb on + strand, within CSW01_00040at 5.204 kb on + strand, within CSW01_00040at 5.204 kb on + strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.212 kb on - strand, within CSW01_00040at 5.224 kb on + strand, within CSW01_00040at 5.258 kb on - strand, within CSW01_00040at 5.291 kb on + strand, within CSW01_00040at 5.309 kb on + strand, within CSW01_00040at 5.345 kb on + strand, within CSW01_00040at 5.386 kb on + strand, within CSW01_00040at 5.441 kb on + strand, within CSW01_00040at 5.449 kb on - strand, within CSW01_00040at 5.463 kb on - strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.479 kb on + strand, within CSW01_00040at 5.479 kb on + strand, within CSW01_00040at 5.482 kb on - strand, within CSW01_00040at 5.485 kb on - strand, within CSW01_00040at 5.486 kb on + strand, within CSW01_00040at 5.492 kb on + strand, within CSW01_00040at 5.571 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.647 kb on - strandat 5.647 kb on - strandat 5.647 kb on - strandat 5.683 kb on + strand, within CSW01_00045at 5.732 kb on + strand, within CSW01_00045at 5.732 kb on + strand, within CSW01_00045at 5.740 kb on - strand, within CSW01_00045at 5.750 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.773 kb on + strand, within CSW01_00045at 5.779 kb on + strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.830 kb on - strand, within CSW01_00045at 5.830 kb on - strand, within CSW01_00045at 5.835 kb on - strand, within CSW01_00045at 5.835 kb on - strand, within CSW01_00045at 5.835 kb on - strand, within CSW01_00045at 5.840 kb on + strand, within CSW01_00045at 5.874 kb on + strand, within CSW01_00045at 5.882 kb on - strand, within CSW01_00045at 5.911 kb on + strand, within CSW01_00045at 5.922 kb on + strand, within CSW01_00045at 5.922 kb on + strand, within CSW01_00045at 5.922 kb on + strand, within CSW01_00045at 5.987 kb on - strand, within CSW01_00045at 5.989 kb on + strand, within CSW01_00045at 5.994 kb on + strand, within CSW01_00045at 5.994 kb on + strand, within CSW01_00045at 5.997 kb on - strand, within CSW01_00045at 5.999 kb on + strand, within CSW01_00045at 6.002 kb on - strand, within CSW01_00045at 6.007 kb on - strand, within CSW01_00045at 6.009 kb on + strand, within CSW01_00045at 6.017 kb on - strand, within CSW01_00045at 6.022 kb on - strand, within CSW01_00045at 6.036 kb on - strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.121 kb on + strand, within CSW01_00045at 6.163 kb on - strand, within CSW01_00045at 6.163 kb on - strand, within CSW01_00045at 6.212 kb on + strandat 6.246 kb on + strandat 6.254 kb on - strandat 6.254 kb on - strandat 6.254 kb on - strandat 6.273 kb on - strandat 6.296 kb on + strandat 6.311 kb on + strandat 6.312 kb on + strandat 6.312 kb on + strandat 6.326 kb on + strandat 6.331 kb on + strandat 6.332 kb on + strandat 6.378 kb on - strandat 6.386 kb on - strandat 6.444 kb on + strand, within CSW01_00050at 6.527 kb on + strand, within CSW01_00050at 6.584 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.596 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_60MIN_ZN2B
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4,097 + CSW01_00025 0.77 +0.2
4,123 - -2.3
4,761 - -1.2
4,768 + -0.3
4,778 + +0.9
4,869 + +0.4
4,937 - +0.1
4,947 - CSW01_00040 0.10 -0.3
4,949 - CSW01_00040 0.11 +0.1
4,955 - CSW01_00040 0.11 -0.6
5,036 + CSW01_00040 0.22 -1.4
5,069 + CSW01_00040 0.27 +0.2
5,077 - CSW01_00040 0.28 -2.6
5,077 - CSW01_00040 0.28 -0.3
5,079 + CSW01_00040 0.28 -0.3
5,092 - CSW01_00040 0.30 +0.4
5,168 - CSW01_00040 0.40 -0.4
5,169 - CSW01_00040 0.40 -0.6
5,181 + CSW01_00040 0.42 -0.4
5,204 + CSW01_00040 0.45 -0.6
5,204 + CSW01_00040 0.45 -0.2
5,212 - CSW01_00040 0.46 -1.0
5,212 - CSW01_00040 0.46 -0.2
5,212 - CSW01_00040 0.46 -1.0
5,212 - CSW01_00040 0.46 -1.8
5,224 + CSW01_00040 0.48 +0.6
5,258 - CSW01_00040 0.52 -0.4
5,291 + CSW01_00040 0.57 -0.1
5,309 + CSW01_00040 0.59 +0.0
5,345 + CSW01_00040 0.64 +0.3
5,386 + CSW01_00040 0.70 +0.0
5,441 + CSW01_00040 0.77 -1.0
5,449 - CSW01_00040 0.78 -0.9
5,463 - CSW01_00040 0.80 -0.2
5,474 + CSW01_00040 0.82 -1.2
5,474 + CSW01_00040 0.82 -0.1
5,474 + CSW01_00040 0.82 -0.2
5,474 + CSW01_00040 0.82 -0.1
5,474 + CSW01_00040 0.82 -0.0
5,474 + CSW01_00040 0.82 +0.2
5,479 + CSW01_00040 0.82 -0.3
5,479 + CSW01_00040 0.82 +0.2
5,482 - CSW01_00040 0.83 +0.8
5,485 - CSW01_00040 0.83 -0.4
5,486 + CSW01_00040 0.83 -0.2
5,492 + CSW01_00040 0.84 -0.3
5,571 + +0.4
5,639 + +0.8
5,639 + -0.5
5,639 + -1.2
5,639 + -2.4
5,647 - +1.5
5,647 - +1.4
5,647 - -0.6
5,683 + CSW01_00045 0.12 -0.3
5,732 + CSW01_00045 0.19 +0.1
5,732 + CSW01_00045 0.19 -2.4
5,740 - CSW01_00045 0.20 -0.8
5,750 + CSW01_00045 0.22 -0.3
5,772 + CSW01_00045 0.25 -0.1
5,772 + CSW01_00045 0.25 +0.2
5,772 + CSW01_00045 0.25 -0.2
5,772 + CSW01_00045 0.25 -2.8
5,772 + CSW01_00045 0.25 +0.2
5,772 + CSW01_00045 0.25 -0.2
5,772 + CSW01_00045 0.25 -0.2
5,773 + CSW01_00045 0.25 +0.8
5,779 + CSW01_00045 0.26 -0.4
5,780 - CSW01_00045 0.26 +0.2
5,780 - CSW01_00045 0.26 -0.1
5,780 - CSW01_00045 0.26 +2.1
5,780 - CSW01_00045 0.26 +0.1
5,780 - CSW01_00045 0.26 +0.2
5,780 - CSW01_00045 0.26 +1.1
5,830 - CSW01_00045 0.33 -0.9
5,830 - CSW01_00045 0.33 +0.1
5,835 - CSW01_00045 0.34 -0.6
5,835 - CSW01_00045 0.34 -0.3
5,835 - CSW01_00045 0.34 +0.3
5,840 + CSW01_00045 0.35 +0.5
5,874 + CSW01_00045 0.40 +0.1
5,882 - CSW01_00045 0.41 +0.7
5,911 + CSW01_00045 0.46 -0.2
5,922 + CSW01_00045 0.47 +0.5
5,922 + CSW01_00045 0.47 +0.6
5,922 + CSW01_00045 0.47 +0.9
5,987 - CSW01_00045 0.57 +2.0
5,989 + CSW01_00045 0.57 +0.2
5,994 + CSW01_00045 0.58 +0.2
5,994 + CSW01_00045 0.58 +0.7
5,997 - CSW01_00045 0.58 -0.2
5,999 + CSW01_00045 0.59 -0.5
6,002 - CSW01_00045 0.59 -0.4
6,007 - CSW01_00045 0.60 +0.7
6,009 + CSW01_00045 0.60 +0.5
6,017 - CSW01_00045 0.61 -0.8
6,022 - CSW01_00045 0.62 +1.1
6,036 - CSW01_00045 0.64 -1.2
6,111 + CSW01_00045 0.75 -0.1
6,111 + CSW01_00045 0.75 -0.2
6,111 + CSW01_00045 0.75 +0.9
6,111 + CSW01_00045 0.75 -0.7
6,111 + CSW01_00045 0.75 +0.0
6,111 + CSW01_00045 0.75 -0.9
6,119 - CSW01_00045 0.76 -0.4
6,119 - CSW01_00045 0.76 -0.3
6,119 - CSW01_00045 0.76 +0.0
6,119 - CSW01_00045 0.76 -0.3
6,119 - CSW01_00045 0.76 +0.1
6,119 - CSW01_00045 0.76 -0.1
6,119 - CSW01_00045 0.76 +0.3
6,119 - CSW01_00045 0.76 -0.1
6,119 - CSW01_00045 0.76 -0.0
6,121 + CSW01_00045 0.77 -0.5
6,163 - CSW01_00045 0.83 -0.2
6,163 - CSW01_00045 0.83 -0.8
6,212 + -0.1
6,246 + +0.3
6,254 - -0.0
6,254 - -0.1
6,254 - +2.4
6,273 - +0.7
6,296 + -0.1
6,311 + -0.3
6,312 + -0.1
6,312 + +0.4
6,326 + -0.6
6,331 + +0.8
6,332 + -0.5
6,378 - -0.3
6,386 - +0.3
6,444 + CSW01_00050 0.12 -1.3
6,527 + CSW01_00050 0.23 +0.5
6,584 + CSW01_00050 0.31 +0.3
6,594 + CSW01_00050 0.32 +0.5
6,594 + CSW01_00050 0.32 -1.5
6,594 + CSW01_00050 0.32 -0.1
6,594 + CSW01_00050 0.32 -0.7
6,594 + CSW01_00050 0.32 +0.6
6,594 + CSW01_00050 0.32 +0.3
6,594 + CSW01_00050 0.32 -1.3
6,594 + CSW01_00050 0.32 -0.4
6,594 + CSW01_00050 0.32 -0.4
6,596 - CSW01_00050 0.32 +0.4
6,602 - CSW01_00050 0.33 +0.2
6,602 - CSW01_00050 0.33 -0.8
6,602 - CSW01_00050 0.33 +1.9
6,602 - CSW01_00050 0.33 -0.6
6,602 - CSW01_00050 0.33 +0.2
6,602 - CSW01_00050 0.33 +0.9
6,602 - CSW01_00050 0.33 -0.7
6,602 - CSW01_00050 0.33 -1.4
6,602 - CSW01_00050 0.33 -0.5
6,602 - CSW01_00050 0.33 -0.4
6,602 - CSW01_00050 0.33 -0.3
6,602 - CSW01_00050 0.33 +0.5

Or see this region's nucleotide sequence