Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21350

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21345 and CA265_RS21350 are separated by 262 nucleotidesCA265_RS21350 and CA265_RS21355 are separated by 904 nucleotides CA265_RS21345: CA265_RS21345 - MFS transporter, at 5,264,051 to 5,265,598 _RS21345 CA265_RS21350: CA265_RS21350 - phosphoenolpyruvate carboxylase, at 5,265,861 to 5,268,446 _RS21350 CA265_RS21355: CA265_RS21355 - hypothetical protein, at 5,269,351 to 5,269,551 _RS21355 Position (kb) 5265 5266 5267 5268 5269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5264.864 kb on - strand, within CA265_RS21345at 5264.873 kb on - strand, within CA265_RS21345at 5264.873 kb on - strand, within CA265_RS21345at 5264.890 kb on - strand, within CA265_RS21345at 5264.891 kb on + strand, within CA265_RS21345at 5264.892 kb on - strand, within CA265_RS21345at 5265.013 kb on + strand, within CA265_RS21345at 5265.013 kb on + strand, within CA265_RS21345at 5265.014 kb on - strand, within CA265_RS21345at 5265.016 kb on + strand, within CA265_RS21345at 5265.016 kb on + strand, within CA265_RS21345at 5265.046 kb on + strand, within CA265_RS21345at 5265.047 kb on - strand, within CA265_RS21345at 5265.109 kb on - strand, within CA265_RS21345at 5265.109 kb on - strand, within CA265_RS21345at 5265.169 kb on - strand, within CA265_RS21345at 5265.172 kb on - strand, within CA265_RS21345at 5265.184 kb on - strand, within CA265_RS21345at 5265.333 kb on + strand, within CA265_RS21345at 5265.334 kb on - strand, within CA265_RS21345at 5265.346 kb on - strand, within CA265_RS21345at 5265.353 kb on + strand, within CA265_RS21345at 5265.356 kb on - strand, within CA265_RS21345at 5265.356 kb on - strand, within CA265_RS21345at 5265.387 kb on + strand, within CA265_RS21345at 5265.484 kb on - strandat 5265.487 kb on + strandat 5265.487 kb on + strandat 5265.487 kb on + strandat 5265.749 kb on - strandat 5265.749 kb on - strandat 5265.830 kb on + strandat 5265.830 kb on + strandat 5265.848 kb on + strandat 5265.855 kb on + strandat 5265.856 kb on - strandat 5266.004 kb on + strandat 5266.075 kb on - strandat 5266.076 kb on + strandat 5266.100 kb on + strandat 5266.131 kb on + strand, within CA265_RS21350at 5266.132 kb on - strand, within CA265_RS21350at 5266.133 kb on + strand, within CA265_RS21350at 5266.133 kb on + strand, within CA265_RS21350at 5266.134 kb on - strand, within CA265_RS21350at 5266.151 kb on - strandat 5266.211 kb on + strandat 5266.212 kb on - strand, within CA265_RS21350at 5266.212 kb on - strand, within CA265_RS21350at 5266.228 kb on + strand, within CA265_RS21350at 5266.306 kb on + strand, within CA265_RS21350at 5266.342 kb on + strand, within CA265_RS21350at 5266.353 kb on - strand, within CA265_RS21350at 5266.391 kb on + strand, within CA265_RS21350at 5266.499 kb on + strand, within CA265_RS21350at 5266.500 kb on - strand, within CA265_RS21350at 5266.658 kb on + strand, within CA265_RS21350at 5266.659 kb on - strand, within CA265_RS21350at 5266.690 kb on - strand, within CA265_RS21350at 5266.690 kb on - strand, within CA265_RS21350at 5266.725 kb on - strand, within CA265_RS21350at 5266.768 kb on + strand, within CA265_RS21350at 5266.768 kb on + strand, within CA265_RS21350at 5266.768 kb on + strand, within CA265_RS21350at 5266.768 kb on + strand, within CA265_RS21350at 5266.769 kb on - strand, within CA265_RS21350at 5266.769 kb on - strand, within CA265_RS21350at 5266.915 kb on + strand, within CA265_RS21350at 5266.981 kb on + strand, within CA265_RS21350at 5266.982 kb on - strand, within CA265_RS21350at 5266.982 kb on - strand, within CA265_RS21350at 5267.022 kb on + strand, within CA265_RS21350at 5267.039 kb on + strand, within CA265_RS21350at 5267.040 kb on - strand, within CA265_RS21350at 5267.062 kb on + strand, within CA265_RS21350at 5267.130 kb on - strand, within CA265_RS21350at 5267.324 kb on - strand, within CA265_RS21350at 5267.360 kb on + strand, within CA265_RS21350at 5267.411 kb on + strand, within CA265_RS21350at 5267.411 kb on + strand, within CA265_RS21350at 5267.412 kb on - strand, within CA265_RS21350at 5267.412 kb on - strand, within CA265_RS21350at 5267.433 kb on - strand, within CA265_RS21350at 5267.449 kb on - strand, within CA265_RS21350at 5267.453 kb on - strand, within CA265_RS21350at 5267.513 kb on + strand, within CA265_RS21350at 5267.516 kb on + strand, within CA265_RS21350at 5267.717 kb on - strand, within CA265_RS21350at 5267.745 kb on - strand, within CA265_RS21350at 5267.800 kb on - strand, within CA265_RS21350at 5267.801 kb on + strand, within CA265_RS21350at 5267.866 kb on + strand, within CA265_RS21350at 5267.892 kb on - strand, within CA265_RS21350at 5267.944 kb on + strand, within CA265_RS21350at 5267.954 kb on + strand, within CA265_RS21350at 5267.975 kb on + strand, within CA265_RS21350at 5268.058 kb on + strand, within CA265_RS21350at 5268.058 kb on + strand, within CA265_RS21350at 5268.058 kb on + strand, within CA265_RS21350at 5268.101 kb on - strand, within CA265_RS21350at 5268.105 kb on - strand, within CA265_RS21350at 5268.105 kb on - strand, within CA265_RS21350at 5268.105 kb on - strand, within CA265_RS21350at 5268.110 kb on + strand, within CA265_RS21350at 5268.193 kb on + strandat 5268.194 kb on - strandat 5268.253 kb on + strandat 5268.409 kb on + strandat 5268.410 kb on - strandat 5268.421 kb on + strandat 5268.447 kb on + strandat 5268.533 kb on - strandat 5268.600 kb on - strandat 5268.828 kb on - strandat 5268.831 kb on - strandat 5268.835 kb on + strandat 5268.843 kb on - strandat 5268.876 kb on + strandat 5268.876 kb on + strandat 5269.011 kb on + strandat 5269.030 kb on + strandat 5269.077 kb on - strandat 5269.077 kb on - strandat 5269.084 kb on + strandat 5269.092 kb on + strandat 5269.093 kb on - strandat 5269.093 kb on - strandat 5269.093 kb on - strandat 5269.116 kb on + strandat 5269.120 kb on - strandat 5269.127 kb on + strandat 5269.177 kb on - strandat 5269.209 kb on + strandat 5269.246 kb on - strandat 5269.284 kb on + strandat 5269.315 kb on + strandat 5269.315 kb on + strandat 5269.360 kb on + strandat 5269.434 kb on + strand, within CA265_RS21355at 5269.442 kb on - strand, within CA265_RS21355

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,264,864 - CA265_RS21345 0.53 -0.3
5,264,873 - CA265_RS21345 0.53 -0.4
5,264,873 - CA265_RS21345 0.53 +0.7
5,264,890 - CA265_RS21345 0.54 -0.3
5,264,891 + CA265_RS21345 0.54 +1.4
5,264,892 - CA265_RS21345 0.54 -0.1
5,265,013 + CA265_RS21345 0.62 -0.0
5,265,013 + CA265_RS21345 0.62 -0.5
5,265,014 - CA265_RS21345 0.62 +0.4
5,265,016 + CA265_RS21345 0.62 -0.4
5,265,016 + CA265_RS21345 0.62 -0.6
5,265,046 + CA265_RS21345 0.64 -0.4
5,265,047 - CA265_RS21345 0.64 +1.3
5,265,109 - CA265_RS21345 0.68 +0.8
5,265,109 - CA265_RS21345 0.68 +0.5
5,265,169 - CA265_RS21345 0.72 -0.1
5,265,172 - CA265_RS21345 0.72 +1.0
5,265,184 - CA265_RS21345 0.73 +0.1
5,265,333 + CA265_RS21345 0.83 +0.9
5,265,334 - CA265_RS21345 0.83 -0.8
5,265,346 - CA265_RS21345 0.84 +0.1
5,265,353 + CA265_RS21345 0.84 +0.2
5,265,356 - CA265_RS21345 0.84 -0.5
5,265,356 - CA265_RS21345 0.84 +1.0
5,265,387 + CA265_RS21345 0.86 -0.5
5,265,484 - -0.2
5,265,487 + -0.7
5,265,487 + -0.1
5,265,487 + -0.4
5,265,749 - -0.1
5,265,749 - +0.2
5,265,830 + +0.6
5,265,830 + -0.1
5,265,848 + +1.2
5,265,855 + -2.7
5,265,856 - -1.7
5,266,004 + -2.3
5,266,075 - -2.7
5,266,076 + -2.1
5,266,100 + -2.6
5,266,131 + CA265_RS21350 0.10 -1.9
5,266,132 - CA265_RS21350 0.10 -1.8
5,266,133 + CA265_RS21350 0.11 -2.8
5,266,133 + CA265_RS21350 0.11 -3.2
5,266,134 - CA265_RS21350 0.11 -4.4
5,266,151 - -0.8
5,266,211 + -0.3
5,266,212 - CA265_RS21350 0.14 -2.3
5,266,212 - CA265_RS21350 0.14 -2.1
5,266,228 + CA265_RS21350 0.14 -3.8
5,266,306 + CA265_RS21350 0.17 -2.2
5,266,342 + CA265_RS21350 0.19 -3.9
5,266,353 - CA265_RS21350 0.19 -2.9
5,266,391 + CA265_RS21350 0.20 -2.2
5,266,499 + CA265_RS21350 0.25 -0.3
5,266,500 - CA265_RS21350 0.25 -3.8
5,266,658 + CA265_RS21350 0.31 -1.8
5,266,659 - CA265_RS21350 0.31 -3.3
5,266,690 - CA265_RS21350 0.32 -2.9
5,266,690 - CA265_RS21350 0.32 -2.9
5,266,725 - CA265_RS21350 0.33 -2.6
5,266,768 + CA265_RS21350 0.35 -1.4
5,266,768 + CA265_RS21350 0.35 -4.2
5,266,768 + CA265_RS21350 0.35 -3.6
5,266,768 + CA265_RS21350 0.35 -2.4
5,266,769 - CA265_RS21350 0.35 -2.0
5,266,769 - CA265_RS21350 0.35 -3.0
5,266,915 + CA265_RS21350 0.41 -3.4
5,266,981 + CA265_RS21350 0.43 -2.8
5,266,982 - CA265_RS21350 0.43 -0.3
5,266,982 - CA265_RS21350 0.43 -2.2
5,267,022 + CA265_RS21350 0.45 -3.3
5,267,039 + CA265_RS21350 0.46 -3.4
5,267,040 - CA265_RS21350 0.46 -3.6
5,267,062 + CA265_RS21350 0.46 -3.5
5,267,130 - CA265_RS21350 0.49 -1.7
5,267,324 - CA265_RS21350 0.57 -3.6
5,267,360 + CA265_RS21350 0.58 -2.4
5,267,411 + CA265_RS21350 0.60 -3.1
5,267,411 + CA265_RS21350 0.60 -1.4
5,267,412 - CA265_RS21350 0.60 +0.4
5,267,412 - CA265_RS21350 0.60 -1.5
5,267,433 - CA265_RS21350 0.61 -2.8
5,267,449 - CA265_RS21350 0.61 -1.1
5,267,453 - CA265_RS21350 0.62 -1.4
5,267,513 + CA265_RS21350 0.64 -0.8
5,267,516 + CA265_RS21350 0.64 -2.2
5,267,717 - CA265_RS21350 0.72 -1.1
5,267,745 - CA265_RS21350 0.73 -0.6
5,267,800 - CA265_RS21350 0.75 -4.1
5,267,801 + CA265_RS21350 0.75 -3.4
5,267,866 + CA265_RS21350 0.78 +2.0
5,267,892 - CA265_RS21350 0.79 -2.0
5,267,944 + CA265_RS21350 0.81 +0.0
5,267,954 + CA265_RS21350 0.81 -2.3
5,267,975 + CA265_RS21350 0.82 -0.6
5,268,058 + CA265_RS21350 0.85 -4.3
5,268,058 + CA265_RS21350 0.85 -0.3
5,268,058 + CA265_RS21350 0.85 -2.2
5,268,101 - CA265_RS21350 0.87 -2.3
5,268,105 - CA265_RS21350 0.87 -1.9
5,268,105 - CA265_RS21350 0.87 -2.0
5,268,105 - CA265_RS21350 0.87 -3.5
5,268,110 + CA265_RS21350 0.87 -3.3
5,268,193 + -2.3
5,268,194 - -1.9
5,268,253 + -1.1
5,268,409 + -1.6
5,268,410 - -1.9
5,268,421 + -2.2
5,268,447 + -1.7
5,268,533 - -0.2
5,268,600 - +0.4
5,268,828 - -0.2
5,268,831 - +0.0
5,268,835 + -0.0
5,268,843 - +0.1
5,268,876 + -0.4
5,268,876 + -0.7
5,269,011 + -0.1
5,269,030 + +0.1
5,269,077 - -0.9
5,269,077 - +0.2
5,269,084 + -1.2
5,269,092 + +1.6
5,269,093 - -0.8
5,269,093 - +0.8
5,269,093 - +0.2
5,269,116 + -0.1
5,269,120 - -1.1
5,269,127 + -0.2
5,269,177 - -1.9
5,269,209 + +0.6
5,269,246 - -0.5
5,269,284 + +0.1
5,269,315 + -0.3
5,269,315 + +0.4
5,269,360 + -0.1
5,269,434 + CA265_RS21355 0.41 +0.7
5,269,442 - CA265_RS21355 0.45 +0.2

Or see this region's nucleotide sequence