Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08700

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
2,174,835	-		CA265_RS08685	0.42	-0.8
2,174,838	+		CA265_RS08685	0.42	-0.5
2,174,839	-		CA265_RS08685	0.42	-0.3
2,174,858	-		CA265_RS08685	0.45	-0.1
2,174,889	+		CA265_RS08685	0.50	-0.7
2,174,935	-		CA265_RS08685	0.57	-1.6
2,175,025	-		CA265_RS08685	0.70	-0.6
2,175,034	-		CA265_RS08685	0.72	-0.2
2,175,034	-		CA265_RS08685	0.72	-0.8
2,175,034	-		CA265_RS08685	0.72	-0.4
2,175,046	+		CA265_RS08685	0.74	+0.0
2,175,046	+		CA265_RS08685	0.74	-1.3
2,175,047	-		CA265_RS08685	0.74	-0.8
2,175,047	-		CA265_RS08685	0.74	+0.1
2,175,079	-		CA265_RS08685	0.79	-1.9
2,175,128	-		CA265_RS08685	0.86	-1.0
2,175,132	+		CA265_RS08685	0.87	-1.0
2,175,470	-				+0.9
2,175,470	-				-0.2
2,175,475	-				-0.4
2,175,479	-				+0.9
2,175,559	-		CA265_RS08695	0.23	-0.3
2,175,792	+				-2.5
2,175,959	+				-5.0
2,175,993	+				-3.1
2,175,994	-				-2.9
2,176,015	-				-4.4
2,176,015	-				-4.2
2,176,090	+				-4.1
2,176,091	-				-3.8
2,176,091	-				-3.6
2,176,097	+				-2.9
2,176,101	+				-5.2
2,176,102	-				-1.2
2,176,175	+				-2.7
2,176,191	-				-3.3
2,176,216	-				-2.4
2,176,293	-		CA265_RS08700	0.10	-3.8
2,176,318	-		CA265_RS08700	0.11	-5.0
2,176,348	-		CA265_RS08700	0.12	-5.2
2,176,416	+		CA265_RS08700	0.13	-1.5
2,176,419	-		CA265_RS08700	0.13	-4.1
2,176,420	+		CA265_RS08700	0.13	-3.9
2,176,434	+		CA265_RS08700	0.13	-2.4
2,176,448	+		CA265_RS08700	0.14	-2.7
2,176,449	-		CA265_RS08700	0.14	-3.6
2,176,596	-		CA265_RS08700	0.17	-3.1
2,176,608	-		CA265_RS08700	0.17	-3.3
2,176,653	+		CA265_RS08700	0.18	-3.6
2,176,672	-		CA265_RS08700	0.19	-3.5
2,176,672	-		CA265_RS08700	0.19	-5.6
2,176,769	+		CA265_RS08700	0.21	-2.9
2,176,769	+		CA265_RS08700	0.21	-4.9
2,176,902	+		CA265_RS08700	0.24	-3.3
2,176,922	+		CA265_RS08700	0.24	-3.6
2,177,020	-		CA265_RS08700	0.26	-4.9
2,177,020	-		CA265_RS08700	0.26	-4.2
2,177,067	-		CA265_RS08700	0.28	-1.7
2,177,089	-		CA265_RS08700	0.28	-3.5
2,177,106	+		CA265_RS08700	0.28	-3.3
2,177,192	+		CA265_RS08700	0.30	-2.4
2,177,193	-		CA265_RS08700	0.30	-4.5
2,177,278	-		CA265_RS08700	0.32	-4.6
2,177,298	+		CA265_RS08700	0.33	-3.6
2,177,366	+		CA265_RS08700	0.34	-5.3
2,177,374	+		CA265_RS08700	0.34	-3.3
2,177,473	-		CA265_RS08700	0.37	-4.6
2,177,517	+		CA265_RS08700	0.38	-3.7
2,177,518	-		CA265_RS08700	0.38	-4.5
2,177,663	-		CA265_RS08700	0.41	-1.5
2,177,702	+		CA265_RS08700	0.42	-1.8
2,177,703	-		CA265_RS08700	0.42	-4.1
2,177,751	-		CA265_RS08700	0.43	-4.4
2,177,768	+		CA265_RS08700	0.43	-3.6
2,177,768	+		CA265_RS08700	0.43	-3.8
2,177,807	+		CA265_RS08700	0.44	-4.0
2,177,808	-		CA265_RS08700	0.44	-4.1
2,177,812	-		CA265_RS08700	0.44	-4.5
2,177,864	+		CA265_RS08700	0.45	-5.7
2,177,864	+		CA265_RS08700	0.45	-1.8
2,177,877	-		CA265_RS08700	0.46	-1.4
2,177,893	+		CA265_RS08700	0.46	-5.0
2,177,939	+		CA265_RS08700	0.47	-3.3
2,177,940	-		CA265_RS08700	0.47	-1.5
2,177,955	+		CA265_RS08700	0.47	-3.8
2,177,955	+		CA265_RS08700	0.47	-3.1
2,177,956	-		CA265_RS08700	0.47	-2.5
2,177,966	-		CA265_RS08700	0.47	-4.9
2,177,971	+		CA265_RS08700	0.48	-0.9
2,177,979	+		CA265_RS08700	0.48	-3.0
2,177,983	-		CA265_RS08700	0.48	-2.9
2,177,995	-		CA265_RS08700	0.48	-3.0
2,178,072	+		CA265_RS08700	0.50	-4.5
2,178,084	-		CA265_RS08700	0.50	-3.4
2,178,087	+		CA265_RS08700	0.50	-3.9
2,178,088	-		CA265_RS08700	0.50	-2.8
2,178,092	-		CA265_RS08700	0.50	-4.2
2,178,115	-		CA265_RS08700	0.51	-3.3
2,178,160	-		CA265_RS08700	0.52	-3.8
2,178,325	+		CA265_RS08700	0.55	-3.7
2,178,326	-		CA265_RS08700	0.55	-4.1
2,178,339	-		CA265_RS08700	0.56	-4.0
2,178,361	+		CA265_RS08700	0.56	-2.9
2,178,361	+		CA265_RS08700	0.56	-1.8
2,178,394	-		CA265_RS08700	0.57	-2.4
2,178,422	+		CA265_RS08700	0.58	-4.1
2,178,423	-		CA265_RS08700	0.58	-2.6
2,178,502	-		CA265_RS08700	0.59	-3.3
2,178,660	-		CA265_RS08700	0.63	-3.1
2,178,685	-		CA265_RS08700	0.63	-1.4
2,178,725	+		CA265_RS08700	0.64	-3.0
2,178,726	-		CA265_RS08700	0.64	-1.1
2,178,912	-		CA265_RS08700	0.69	-4.7
2,178,916	-		CA265_RS08700	0.69	-4.3
2,178,936	+		CA265_RS08700	0.69	-2.3
2,179,034	+		CA265_RS08700	0.71	-3.5
2,179,035	-		CA265_RS08700	0.71	-4.9
2,179,135	-		CA265_RS08700	0.73	-4.1
2,179,148	+		CA265_RS08700	0.74	-4.5
2,179,148	+		CA265_RS08700	0.74	-2.9
2,179,149	-		CA265_RS08700	0.74	-4.0
2,179,203	+		CA265_RS08700	0.75	-2.7
2,179,203	+		CA265_RS08700	0.75	-3.6
2,179,204	-		CA265_RS08700	0.75	-4.7
2,179,212	+		CA265_RS08700	0.75	-2.2
2,179,228	-		CA265_RS08700	0.76	-4.0
2,179,228	-		CA265_RS08700	0.76	-2.5
2,179,249	-		CA265_RS08700	0.76	-3.5
2,179,275	-		CA265_RS08700	0.77	-2.0
2,179,308	-		CA265_RS08700	0.77	-2.8
2,179,341	+		CA265_RS08700	0.78	-3.7
2,179,392	+		CA265_RS08700	0.79	-1.4
2,179,456	-		CA265_RS08700	0.81	+0.9
2,179,460	+		CA265_RS08700	0.81	-3.5
2,179,461	-		CA265_RS08700	0.81	-5.2
2,179,490	+		CA265_RS08700	0.81	-1.7
2,179,497	+		CA265_RS08700	0.82	-2.6
2,179,520	+		CA265_RS08700	0.82	-3.9
2,179,533	-		CA265_RS08700	0.82	-4.6
2,179,533	-		CA265_RS08700	0.82	-2.4
2,179,539	+		CA265_RS08700	0.82	-2.9
2,179,540	-		CA265_RS08700	0.82	-2.7
2,179,540	-		CA265_RS08700	0.82	-3.6
2,179,783	+		CA265_RS08700	0.88	-4.6
2,179,878	-		CA265_RS08700	0.90	-4.4
2,179,878	-		CA265_RS08700	0.90	-3.3
2,179,878	-		CA265_RS08700	0.90	-2.8
2,180,059	-				-3.7
2,180,190	+				-2.7
2,180,262	-				-1.0
2,180,282	-				-2.5
2,180,304	+				-1.5
2,180,327	-				-3.1
2,180,360	-				-1.6
2,180,360	-				-3.6
2,180,411	-				-5.2
2,180,424	-				-4.2
2,180,469	+				-1.9
2,180,484	-		CA265_RS08705	0.10	-1.7
2,180,532	+		CA265_RS08705	0.14	-2.2
2,180,574	+		CA265_RS08705	0.16	-2.6
2,180,656	-		CA265_RS08705	0.22	-3.9
2,180,658	+		CA265_RS08705	0.22	-2.1
2,180,727	+		CA265_RS08705	0.27	-2.5
2,180,820	+		CA265_RS08705	0.33	-5.3
2,180,873	+		CA265_RS08705	0.37	-2.0
2,180,936	+		CA265_RS08705	0.41	-2.2
2,180,952	+		CA265_RS08705	0.42	-4.7
2,180,968	-		CA265_RS08705	0.43	-2.8
2,180,968	-		CA265_RS08705	0.43	-3.7
2,180,996	+		CA265_RS08705	0.45	-3.0
2,180,996	+		CA265_RS08705	0.45	-3.7
2,180,997	-		CA265_RS08705	0.45	-3.1
2,180,997	-		CA265_RS08705	0.45	-1.3
2,181,048	+		CA265_RS08705	0.49	-3.2
2,181,048	+		CA265_RS08705	0.49	-3.7
2,181,163	-		CA265_RS08705	0.57	-4.8
2,181,186	-		CA265_RS08705	0.58	-3.4
2,181,192	-		CA265_RS08705	0.59	-3.5
2,181,192	-		CA265_RS08705	0.59	-2.3