Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06255

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS06245 and CA265_RS06250 are separated by 203 nucleotidesCA265_RS06250 and CA265_RS06255 are separated by 6 nucleotidesCA265_RS06255 and CA265_RS06260 are separated by 163 nucleotides CA265_RS06245: CA265_RS06245 - hypothetical protein, at 1,537,328 to 1,537,546 _RS06245 CA265_RS06250: CA265_RS06250 - RNA polymerase subunit sigma-70, at 1,537,750 to 1,538,316 _RS06250 CA265_RS06255: CA265_RS06255 - serine protease, at 1,538,323 to 1,539,417 _RS06255 CA265_RS06260: CA265_RS06260 - peroxidase, at 1,539,581 to 1,540,216 _RS06260 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1537.725 kb on + strandat 1537.741 kb on + strandat 1537.808 kb on + strand, within CA265_RS06250at 1537.849 kb on + strand, within CA265_RS06250at 1538.058 kb on + strand, within CA265_RS06250at 1538.241 kb on + strand, within CA265_RS06250at 1538.342 kb on + strandat 1538.412 kb on - strandat 1538.454 kb on + strand, within CA265_RS06255at 1538.455 kb on - strand, within CA265_RS06255at 1538.520 kb on + strand, within CA265_RS06255at 1538.521 kb on - strand, within CA265_RS06255at 1538.605 kb on - strand, within CA265_RS06255at 1538.664 kb on + strand, within CA265_RS06255at 1538.994 kb on - strand, within CA265_RS06255at 1539.008 kb on - strand, within CA265_RS06255at 1539.036 kb on - strand, within CA265_RS06255at 1539.447 kb on + strandat 1539.537 kb on + strandat 1539.702 kb on - strand, within CA265_RS06260at 1539.786 kb on + strand, within CA265_RS06260at 1539.847 kb on + strand, within CA265_RS06260at 1539.848 kb on - strandat 1539.901 kb on - strand, within CA265_RS06260at 1539.907 kb on + strand, within CA265_RS06260at 1539.908 kb on - strand, within CA265_RS06260at 1539.984 kb on + strand, within CA265_RS06260at 1539.991 kb on + strand, within CA265_RS06260at 1540.030 kb on - strand, within CA265_RS06260at 1540.030 kb on - strand, within CA265_RS06260at 1540.067 kb on + strand, within CA265_RS06260at 1540.070 kb on - strand, within CA265_RS06260at 1540.110 kb on + strand, within CA265_RS06260at 1540.120 kb on - strand, within CA265_RS06260at 1540.130 kb on - strand, within CA265_RS06260at 1540.130 kb on - strand, within CA265_RS06260at 1540.174 kb on - strandat 1540.189 kb on - strandat 1540.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,537,725 + +0.1
1,537,741 + -0.5
1,537,808 + CA265_RS06250 0.10 -1.3
1,537,849 + CA265_RS06250 0.17 -0.5
1,538,058 + CA265_RS06250 0.54 -1.8
1,538,241 + CA265_RS06250 0.87 -0.3
1,538,342 + +1.9
1,538,412 - -2.2
1,538,454 + CA265_RS06255 0.12 +0.9
1,538,455 - CA265_RS06255 0.12 -2.8
1,538,520 + CA265_RS06255 0.18 -1.1
1,538,521 - CA265_RS06255 0.18 -1.6
1,538,605 - CA265_RS06255 0.26 -1.1
1,538,664 + CA265_RS06255 0.31 -1.2
1,538,994 - CA265_RS06255 0.61 +0.8
1,539,008 - CA265_RS06255 0.63 -0.4
1,539,036 - CA265_RS06255 0.65 -0.5
1,539,447 + +0.0
1,539,537 + -0.2
1,539,702 - CA265_RS06260 0.19 +0.3
1,539,786 + CA265_RS06260 0.32 +0.3
1,539,847 + CA265_RS06260 0.42 -0.8
1,539,848 - +0.2
1,539,901 - CA265_RS06260 0.50 +0.2
1,539,907 + CA265_RS06260 0.51 -0.7
1,539,908 - CA265_RS06260 0.51 -0.6
1,539,984 + CA265_RS06260 0.63 -1.0
1,539,991 + CA265_RS06260 0.64 -0.4
1,540,030 - CA265_RS06260 0.71 +1.7
1,540,030 - CA265_RS06260 0.71 -0.1
1,540,067 + CA265_RS06260 0.76 -0.9
1,540,070 - CA265_RS06260 0.77 -0.3
1,540,110 + CA265_RS06260 0.83 -0.9
1,540,120 - CA265_RS06260 0.85 -2.2
1,540,130 - CA265_RS06260 0.86 +0.1
1,540,130 - CA265_RS06260 0.86 +0.6
1,540,174 - -0.2
1,540,189 - +0.7
1,540,215 - +0.2

Or see this region's nucleotide sequence