Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04105

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS04095 and CA265_RS04100 are separated by 104 nucleotidesCA265_RS04100 and CA265_RS04105 overlap by 17 nucleotidesCA265_RS04105 and CA265_RS04110 are separated by 2 nucleotidesCA265_RS04110 and CA265_RS04115 are separated by 193 nucleotides CA265_RS04095: CA265_RS04095 - nitrite reductase, at 985,147 to 987,237 _RS04095 CA265_RS04100: CA265_RS04100 - uroporphyrinogen-III C-methyltransferase, at 987,342 to 988,112 _RS04100 CA265_RS04105: CA265_RS04105 - siroheme synthase, at 988,096 to 989,607 _RS04105 CA265_RS04110: CA265_RS04110 - phosphoadenosine phosphosulfate reductase, at 989,610 to 990,308 _RS04110 CA265_RS04115: CA265_RS04115 - sulfate adenylyltransferase, at 990,502 to 991,407 _RS04115 Position (kb) 988 989 990Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 987.129 kb on - strandat 987.251 kb on - strandat 987.251 kb on - strandat 987.416 kb on - strandat 987.416 kb on - strandat 987.457 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.725 kb on - strand, within CA265_RS04100at 987.825 kb on + strand, within CA265_RS04100at 987.974 kb on - strand, within CA265_RS04100at 988.020 kb on - strand, within CA265_RS04100at 988.023 kb on - strand, within CA265_RS04100at 988.088 kb on + strandat 988.095 kb on + strandat 988.096 kb on - strandat 988.178 kb on + strandat 988.197 kb on + strandat 988.202 kb on + strandat 988.205 kb on + strandat 988.292 kb on + strand, within CA265_RS04105at 988.310 kb on - strand, within CA265_RS04105at 988.365 kb on - strand, within CA265_RS04105at 988.365 kb on - strand, within CA265_RS04105at 988.365 kb on - strand, within CA265_RS04105at 988.407 kb on + strand, within CA265_RS04105at 988.414 kb on - strand, within CA265_RS04105at 988.418 kb on + strand, within CA265_RS04105at 988.477 kb on - strand, within CA265_RS04105at 988.635 kb on + strand, within CA265_RS04105at 988.658 kb on + strand, within CA265_RS04105at 988.659 kb on - strand, within CA265_RS04105at 988.695 kb on + strand, within CA265_RS04105at 988.778 kb on + strand, within CA265_RS04105at 988.856 kb on + strand, within CA265_RS04105at 988.857 kb on - strand, within CA265_RS04105at 988.886 kb on + strand, within CA265_RS04105at 989.017 kb on - strand, within CA265_RS04105at 989.051 kb on + strand, within CA265_RS04105at 989.114 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.130 kb on - strand, within CA265_RS04105at 989.137 kb on + strand, within CA265_RS04105at 989.146 kb on + strand, within CA265_RS04105at 989.147 kb on - strand, within CA265_RS04105at 989.147 kb on - strand, within CA265_RS04105at 989.171 kb on - strand, within CA265_RS04105at 989.173 kb on - strand, within CA265_RS04105at 989.178 kb on - strand, within CA265_RS04105at 989.183 kb on + strand, within CA265_RS04105at 989.319 kb on - strand, within CA265_RS04105at 989.331 kb on - strand, within CA265_RS04105at 989.413 kb on - strand, within CA265_RS04105at 989.421 kb on + strand, within CA265_RS04105at 989.429 kb on + strand, within CA265_RS04105at 989.466 kb on + strandat 989.565 kb on - strandat 989.655 kb on - strandat 989.685 kb on - strand, within CA265_RS04110at 989.766 kb on - strand, within CA265_RS04110at 989.775 kb on - strand, within CA265_RS04110at 989.818 kb on - strand, within CA265_RS04110at 989.840 kb on - strand, within CA265_RS04110at 989.840 kb on - strand, within CA265_RS04110at 989.848 kb on - strand, within CA265_RS04110at 989.863 kb on - strand, within CA265_RS04110at 989.863 kb on - strand, within CA265_RS04110at 989.962 kb on - strand, within CA265_RS04110at 989.962 kb on - strand, within CA265_RS04110at 989.996 kb on - strand, within CA265_RS04110at 990.057 kb on - strand, within CA265_RS04110at 990.108 kb on - strand, within CA265_RS04110at 990.125 kb on - strand, within CA265_RS04110at 990.166 kb on - strand, within CA265_RS04110at 990.198 kb on - strand, within CA265_RS04110at 990.306 kb on + strandat 990.307 kb on - strandat 990.307 kb on - strandat 990.307 kb on - strandat 990.433 kb on + strandat 990.434 kb on - strandat 990.461 kb on - strandat 990.507 kb on + strandat 990.507 kb on + strandat 990.513 kb on + strandat 990.514 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
987,129 - -4.0
987,251 - -4.2
987,251 - -4.2
987,416 - -1.8
987,416 - -3.5
987,457 - CA265_RS04100 0.15 -1.2
987,676 - CA265_RS04100 0.43 -5.1
987,676 - CA265_RS04100 0.43 -2.2
987,676 - CA265_RS04100 0.43 -2.5
987,725 - CA265_RS04100 0.50 -2.1
987,825 + CA265_RS04100 0.63 -1.6
987,974 - CA265_RS04100 0.82 -1.9
988,020 - CA265_RS04100 0.88 -4.4
988,023 - CA265_RS04100 0.88 -2.2
988,088 + -1.0
988,095 + -1.5
988,096 - -1.4
988,178 + -1.6
988,197 + -4.0
988,202 + -4.3
988,205 + -1.8
988,292 + CA265_RS04105 0.13 -1.2
988,310 - CA265_RS04105 0.14 -3.6
988,365 - CA265_RS04105 0.18 -4.2
988,365 - CA265_RS04105 0.18 -2.8
988,365 - CA265_RS04105 0.18 -4.7
988,407 + CA265_RS04105 0.21 -3.2
988,414 - CA265_RS04105 0.21 -3.8
988,418 + CA265_RS04105 0.21 -1.1
988,477 - CA265_RS04105 0.25 -4.6
988,635 + CA265_RS04105 0.36 -2.8
988,658 + CA265_RS04105 0.37 -3.5
988,659 - CA265_RS04105 0.37 -3.3
988,695 + CA265_RS04105 0.40 -0.3
988,778 + CA265_RS04105 0.45 -2.1
988,856 + CA265_RS04105 0.50 -3.8
988,857 - CA265_RS04105 0.50 -1.6
988,886 + CA265_RS04105 0.52 -5.4
989,017 - CA265_RS04105 0.61 -4.4
989,051 + CA265_RS04105 0.63 -4.5
989,114 - CA265_RS04105 0.67 -2.0
989,116 - CA265_RS04105 0.67 -3.0
989,116 - CA265_RS04105 0.67 -3.3
989,116 - CA265_RS04105 0.67 -3.3
989,116 - CA265_RS04105 0.67 -3.7
989,130 - CA265_RS04105 0.68 -1.4
989,137 + CA265_RS04105 0.69 -4.8
989,146 + CA265_RS04105 0.69 -3.8
989,147 - CA265_RS04105 0.70 -3.8
989,147 - CA265_RS04105 0.70 -2.7
989,171 - CA265_RS04105 0.71 -3.6
989,173 - CA265_RS04105 0.71 -2.2
989,178 - CA265_RS04105 0.72 -2.0
989,183 + CA265_RS04105 0.72 -4.5
989,319 - CA265_RS04105 0.81 -3.8
989,331 - CA265_RS04105 0.82 -4.4
989,413 - CA265_RS04105 0.87 -2.2
989,421 + CA265_RS04105 0.88 -2.8
989,429 + CA265_RS04105 0.88 -2.5
989,466 + -2.3
989,565 - -2.5
989,655 - -3.5
989,685 - CA265_RS04110 0.11 -3.3
989,766 - CA265_RS04110 0.22 -4.5
989,775 - CA265_RS04110 0.24 -2.9
989,818 - CA265_RS04110 0.30 -5.3
989,840 - CA265_RS04110 0.33 -4.9
989,840 - CA265_RS04110 0.33 -3.0
989,848 - CA265_RS04110 0.34 -3.0
989,863 - CA265_RS04110 0.36 -1.9
989,863 - CA265_RS04110 0.36 -4.8
989,962 - CA265_RS04110 0.50 -2.6
989,962 - CA265_RS04110 0.50 -1.9
989,996 - CA265_RS04110 0.55 -0.8
990,057 - CA265_RS04110 0.64 -3.6
990,108 - CA265_RS04110 0.71 -4.3
990,125 - CA265_RS04110 0.74 -2.9
990,166 - CA265_RS04110 0.80 -1.6
990,198 - CA265_RS04110 0.84 -4.5
990,306 + -0.6
990,307 - -3.1
990,307 - -2.4
990,307 - -4.7
990,433 + +0.3
990,434 - -4.7
990,461 - -4.5
990,507 + -2.2
990,507 + -1.1
990,513 + -1.7
990,514 - -2.9

Or see this region's nucleotide sequence