Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26275 and AO356_26280 are separated by 241 nucleotides AO356_26280 and AO356_26285 overlap by 1 nucleotides AO356_26285 and AO356_26290 are separated by 234 nucleotides
AO356_26275: AO356_26275 - cag pathogenicity island protein Cag5, at 5,952,111 to 5,952,632
_26275
AO356_26280: AO356_26280 - RNA polymerase subunit sigma, at 5,952,874 to 5,953,383
_26280
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
AO356_26290: AO356_26290 - TonB-dependent receptor, at 5,954,562 to 5,956,985
_26290
Position (kb) 5953
5954
5955 Strain fitness (log2 ratio) -1
0
1 at 5952.477 kb on + strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.479 kb on + strand, within AO356_26275 at 5952.480 kb on - strand, within AO356_26275 at 5952.531 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.786 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.889 kb on - strand at 5953.064 kb on - strand, within AO356_26280 at 5953.102 kb on + strand, within AO356_26280 at 5953.129 kb on + strand, within AO356_26280 at 5953.130 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.339 kb on + strand at 5953.339 kb on + strand at 5953.354 kb on + strand at 5953.355 kb on - strand at 5953.888 kb on - strand, within AO356_26285 at 5953.975 kb on - strand, within AO356_26285 at 5954.346 kb on + strand at 5954.346 kb on + strand at 5954.347 kb on - strand at 5954.465 kb on - strand at 5954.486 kb on + strand at 5954.486 kb on + strand at 5954.575 kb on + strand at 5954.576 kb on - strand at 5954.576 kb on - strand at 5954.576 kb on - strand at 5954.704 kb on - strand at 5954.901 kb on + strand, within AO356_26290 at 5954.902 kb on - strand, within AO356_26290 at 5954.992 kb on - strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.079 kb on - strand, within AO356_26290 at 5955.079 kb on - strand, within AO356_26290 at 5955.229 kb on - strand, within AO356_26290 at 5955.259 kb on - strand, within AO356_26290
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 5,952,477 + AO356_26275 0.70 -0.8 5,952,478 - AO356_26275 0.70 +0.3 5,952,478 - AO356_26275 0.70 -0.8 5,952,479 + AO356_26275 0.70 -0.4 5,952,480 - AO356_26275 0.71 -0.3 5,952,531 + AO356_26275 0.80 +0.1 5,952,543 + AO356_26275 0.83 +0.5 5,952,543 + AO356_26275 0.83 -1.7 5,952,786 + +0.2 5,952,888 + +0.5 5,952,888 + -0.2 5,952,888 + +0.1 5,952,889 - +0.5 5,953,064 - AO356_26280 0.37 +0.1 5,953,102 + AO356_26280 0.45 +0.7 5,953,129 + AO356_26280 0.50 +0.9 5,953,130 - AO356_26280 0.50 -0.5 5,953,134 - AO356_26280 0.51 -0.4 5,953,134 - AO356_26280 0.51 +0.4 5,953,134 - AO356_26280 0.51 +0.2 5,953,339 + -1.3 5,953,339 + +0.1 5,953,354 + -0.6 5,953,355 - +0.1 5,953,888 - AO356_26285 0.53 -0.8 5,953,975 - AO356_26285 0.63 -0.5 5,954,346 + +0.3 5,954,346 + +0.6 5,954,347 - -0.7 5,954,465 - -1.3 5,954,486 + -0.8 5,954,486 + +0.4 5,954,575 + +0.0 5,954,576 - -0.1 5,954,576 - +0.8 5,954,576 - -0.4 5,954,704 - +0.4 5,954,901 + AO356_26290 0.14 +0.9 5,954,902 - AO356_26290 0.14 +0.2 5,954,992 - AO356_26290 0.18 +1.2 5,955,078 + AO356_26290 0.21 -0.2 5,955,078 + AO356_26290 0.21 -1.6 5,955,078 + AO356_26290 0.21 +0.8 5,955,078 + AO356_26290 0.21 +0.3 5,955,078 + AO356_26290 0.21 +0.3 5,955,079 - AO356_26290 0.21 +0.5 5,955,079 - AO356_26290 0.21 +0.0 5,955,229 - AO356_26290 0.28 +0.7 5,955,259 - AO356_26290 0.29 -0.6
Or see this region's nucleotide sequence