Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22255

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22245 and AO356_22250 are separated by 129 nucleotidesAO356_22250 and AO356_22255 are separated by 164 nucleotidesAO356_22255 and AO356_22260 are separated by 40 nucleotidesAO356_22260 and AO356_22265 are separated by 60 nucleotides AO356_22245: AO356_22245 - hypothetical protein, at 4,975,629 to 4,975,979 _22245 AO356_22250: AO356_22250 - GCN5 family acetyltransferase, at 4,976,109 to 4,976,537 _22250 AO356_22255: AO356_22255 - gamma-glutamyltranspeptidase, at 4,976,702 to 4,978,429 _22255 AO356_22260: AO356_22260 - isochorismatase, at 4,978,470 to 4,979,003 _22260 AO356_22265: AO356_22265 - hypothetical protein, at 4,979,064 to 4,979,924 _22265 Position (kb) 4976 4977 4978 4979Strain fitness (log2 ratio) -2 -1 0 1at 4975.716 kb on + strand, within AO356_22245at 4975.716 kb on + strand, within AO356_22245at 4975.717 kb on - strand, within AO356_22245at 4975.815 kb on + strand, within AO356_22245at 4975.816 kb on - strand, within AO356_22245at 4975.914 kb on + strand, within AO356_22245at 4975.914 kb on + strand, within AO356_22245at 4975.915 kb on - strand, within AO356_22245at 4975.915 kb on - strand, within AO356_22245at 4975.915 kb on - strand, within AO356_22245at 4975.915 kb on - strand, within AO356_22245at 4975.977 kb on + strandat 4975.977 kb on + strandat 4975.977 kb on + strandat 4975.977 kb on + strandat 4975.978 kb on - strandat 4975.978 kb on - strandat 4975.978 kb on - strandat 4975.978 kb on - strandat 4976.007 kb on - strandat 4976.007 kb on - strandat 4976.007 kb on - strandat 4976.007 kb on - strandat 4976.066 kb on - strandat 4976.161 kb on + strand, within AO356_22250at 4976.204 kb on - strand, within AO356_22250at 4976.347 kb on + strand, within AO356_22250at 4976.347 kb on + strand, within AO356_22250at 4976.348 kb on - strand, within AO356_22250at 4976.348 kb on - strand, within AO356_22250at 4976.374 kb on + strand, within AO356_22250at 4976.470 kb on - strand, within AO356_22250at 4976.530 kb on - strandat 4976.629 kb on + strandat 4976.629 kb on + strandat 4976.673 kb on + strandat 4976.673 kb on + strandat 4976.900 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.035 kb on + strand, within AO356_22255at 4977.036 kb on - strand, within AO356_22255at 4977.036 kb on - strand, within AO356_22255at 4977.036 kb on - strand, within AO356_22255at 4977.036 kb on - strand, within AO356_22255at 4977.140 kb on + strand, within AO356_22255at 4977.141 kb on - strand, within AO356_22255at 4977.141 kb on - strand, within AO356_22255at 4977.386 kb on + strand, within AO356_22255at 4977.387 kb on - strand, within AO356_22255at 4977.387 kb on - strand, within AO356_22255at 4977.467 kb on + strand, within AO356_22255at 4977.468 kb on - strand, within AO356_22255at 4977.468 kb on - strand, within AO356_22255at 4977.468 kb on - strand, within AO356_22255at 4977.468 kb on - strand, within AO356_22255at 4977.468 kb on - strand, within AO356_22255at 4977.468 kb on - strand, within AO356_22255at 4977.513 kb on - strand, within AO356_22255at 4977.520 kb on + strand, within AO356_22255at 4977.520 kb on + strand, within AO356_22255at 4977.520 kb on + strand, within AO356_22255at 4977.521 kb on - strand, within AO356_22255at 4977.521 kb on - strand, within AO356_22255at 4977.574 kb on + strand, within AO356_22255at 4977.660 kb on - strand, within AO356_22255at 4977.677 kb on + strand, within AO356_22255at 4977.677 kb on + strand, within AO356_22255at 4977.678 kb on - strand, within AO356_22255at 4977.735 kb on - strand, within AO356_22255at 4977.735 kb on - strand, within AO356_22255at 4977.735 kb on - strand, within AO356_22255at 4977.735 kb on - strand, within AO356_22255at 4977.747 kb on + strand, within AO356_22255at 4977.748 kb on - strand, within AO356_22255at 4977.836 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.878 kb on + strand, within AO356_22255at 4977.879 kb on - strand, within AO356_22255at 4977.879 kb on - strand, within AO356_22255at 4977.879 kb on - strand, within AO356_22255at 4977.879 kb on - strand, within AO356_22255at 4977.986 kb on + strand, within AO356_22255at 4977.986 kb on + strand, within AO356_22255at 4977.986 kb on + strand, within AO356_22255at 4977.986 kb on + strand, within AO356_22255at 4977.986 kb on + strand, within AO356_22255at 4977.987 kb on - strand, within AO356_22255at 4977.987 kb on - strand, within AO356_22255at 4977.987 kb on - strand, within AO356_22255at 4977.987 kb on - strand, within AO356_22255at 4977.987 kb on - strand, within AO356_22255at 4977.987 kb on - strand, within AO356_22255at 4978.157 kb on + strand, within AO356_22255at 4978.379 kb on + strandat 4978.379 kb on + strandat 4978.490 kb on + strandat 4978.731 kb on + strand, within AO356_22260at 4978.731 kb on + strand, within AO356_22260at 4978.806 kb on + strand, within AO356_22260at 4978.806 kb on + strand, within AO356_22260at 4978.975 kb on + strandat 4978.976 kb on - strandat 4979.038 kb on + strandat 4979.038 kb on + strandat 4979.038 kb on + strandat 4979.039 kb on - strandat 4979.039 kb on - strandat 4979.039 kb on - strandat 4979.039 kb on - strandat 4979.092 kb on + strandat 4979.092 kb on + strandat 4979.320 kb on + strand, within AO356_22265at 4979.320 kb on + strand, within AO356_22265at 4979.320 kb on + strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265at 4979.321 kb on - strand, within AO356_22265

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
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4,975,716 + AO356_22245 0.25 +0.8
4,975,716 + AO356_22245 0.25 +1.5
4,975,717 - AO356_22245 0.25 +0.2
4,975,815 + AO356_22245 0.53 -0.3
4,975,816 - AO356_22245 0.53 +0.8
4,975,914 + AO356_22245 0.81 +0.3
4,975,914 + AO356_22245 0.81 -0.6
4,975,915 - AO356_22245 0.81 +0.7
4,975,915 - AO356_22245 0.81 -0.2
4,975,915 - AO356_22245 0.81 -0.3
4,975,915 - AO356_22245 0.81 +0.1
4,975,977 + -0.7
4,975,977 + +0.1
4,975,977 + +0.4
4,975,977 + -0.2
4,975,978 - -0.0
4,975,978 - +0.0
4,975,978 - -0.3
4,975,978 - -1.2
4,976,007 - +0.6
4,976,007 - -0.9
4,976,007 - -0.1
4,976,007 - +0.4
4,976,066 - -0.4
4,976,161 + AO356_22250 0.12 -0.1
4,976,204 - AO356_22250 0.22 -2.1
4,976,347 + AO356_22250 0.55 +0.7
4,976,347 + AO356_22250 0.55 +0.4
4,976,348 - AO356_22250 0.56 -0.9
4,976,348 - AO356_22250 0.56 +0.9
4,976,374 + AO356_22250 0.62 -1.6
4,976,470 - AO356_22250 0.84 -0.4
4,976,530 - -0.6
4,976,629 + +0.1
4,976,629 + +0.7
4,976,673 + +0.1
4,976,673 + -0.1
4,976,900 + AO356_22255 0.11 +0.1
4,977,035 + AO356_22255 0.19 +0.1
4,977,035 + AO356_22255 0.19 +0.7
4,977,035 + AO356_22255 0.19 -1.1
4,977,035 + AO356_22255 0.19 -0.6
4,977,035 + AO356_22255 0.19 +0.3
4,977,035 + AO356_22255 0.19 +0.8
4,977,035 + AO356_22255 0.19 -0.1
4,977,035 + AO356_22255 0.19 +0.5
4,977,036 - AO356_22255 0.19 +0.9
4,977,036 - AO356_22255 0.19 +0.8
4,977,036 - AO356_22255 0.19 +0.3
4,977,036 - AO356_22255 0.19 +0.0
4,977,140 + AO356_22255 0.25 +0.5
4,977,141 - AO356_22255 0.25 -0.2
4,977,141 - AO356_22255 0.25 -0.7
4,977,386 + AO356_22255 0.40 -0.3
4,977,387 - AO356_22255 0.40 +1.1
4,977,387 - AO356_22255 0.40 +1.4
4,977,467 + AO356_22255 0.44 +1.0
4,977,468 - AO356_22255 0.44 +0.5
4,977,468 - AO356_22255 0.44 -0.2
4,977,468 - AO356_22255 0.44 +0.5
4,977,468 - AO356_22255 0.44 -0.8
4,977,468 - AO356_22255 0.44 +0.5
4,977,468 - AO356_22255 0.44 +0.5
4,977,513 - AO356_22255 0.47 +0.1
4,977,520 + AO356_22255 0.47 -0.9
4,977,520 + AO356_22255 0.47 +0.9
4,977,520 + AO356_22255 0.47 +0.0
4,977,521 - AO356_22255 0.47 -0.5
4,977,521 - AO356_22255 0.47 -1.0
4,977,574 + AO356_22255 0.50 -0.4
4,977,660 - AO356_22255 0.55 +0.1
4,977,677 + AO356_22255 0.56 -0.7
4,977,677 + AO356_22255 0.56 +0.0
4,977,678 - AO356_22255 0.56 +1.1
4,977,735 - AO356_22255 0.60 -0.2
4,977,735 - AO356_22255 0.60 +0.1
4,977,735 - AO356_22255 0.60 +0.7
4,977,735 - AO356_22255 0.60 -0.6
4,977,747 + AO356_22255 0.60 +0.2
4,977,748 - AO356_22255 0.61 +0.8
4,977,836 + AO356_22255 0.66 -0.2
4,977,878 + AO356_22255 0.68 -0.1
4,977,878 + AO356_22255 0.68 +0.5
4,977,878 + AO356_22255 0.68 +0.3
4,977,878 + AO356_22255 0.68 -0.9
4,977,878 + AO356_22255 0.68 -0.4
4,977,878 + AO356_22255 0.68 +0.4
4,977,878 + AO356_22255 0.68 +0.1
4,977,879 - AO356_22255 0.68 +0.5
4,977,879 - AO356_22255 0.68 +0.2
4,977,879 - AO356_22255 0.68 -0.0
4,977,879 - AO356_22255 0.68 +0.5
4,977,986 + AO356_22255 0.74 +0.7
4,977,986 + AO356_22255 0.74 +0.7
4,977,986 + AO356_22255 0.74 +0.1
4,977,986 + AO356_22255 0.74 +0.1
4,977,986 + AO356_22255 0.74 +0.2
4,977,987 - AO356_22255 0.74 +1.1
4,977,987 - AO356_22255 0.74 +0.9
4,977,987 - AO356_22255 0.74 -0.1
4,977,987 - AO356_22255 0.74 -0.0
4,977,987 - AO356_22255 0.74 -0.1
4,977,987 - AO356_22255 0.74 -0.2
4,978,157 + AO356_22255 0.84 -0.6
4,978,379 + -0.3
4,978,379 + +0.7
4,978,490 + -0.2
4,978,731 + AO356_22260 0.49 -0.7
4,978,731 + AO356_22260 0.49 +0.2
4,978,806 + AO356_22260 0.63 -0.2
4,978,806 + AO356_22260 0.63 -0.3
4,978,975 + +0.2
4,978,976 - -0.2
4,979,038 + +1.5
4,979,038 + -1.1
4,979,038 + +0.7
4,979,039 - +0.2
4,979,039 - -1.2
4,979,039 - +0.5
4,979,039 - +0.6
4,979,092 + -0.1
4,979,092 + +0.7
4,979,320 + AO356_22265 0.30 -0.3
4,979,320 + AO356_22265 0.30 -0.1
4,979,320 + AO356_22265 0.30 -0.2
4,979,321 - AO356_22265 0.30 +0.5
4,979,321 - AO356_22265 0.30 -0.2
4,979,321 - AO356_22265 0.30 +0.7
4,979,321 - AO356_22265 0.30 +0.3

Or see this region's nucleotide sequence