Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18660

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18655 and AO356_18660 overlap by 4 nucleotidesAO356_18660 and AO356_18665 are separated by 91 nucleotidesAO356_18665 and AO356_18670 are separated by 355 nucleotides AO356_18655: AO356_18655 - toxin HipA, at 4,191,900 to 4,193,216 _18655 AO356_18660: AO356_18660 - transcriptional regulator, at 4,193,213 to 4,193,617 _18660 AO356_18665: AO356_18665 - antitoxin, at 4,193,709 to 4,193,954 _18665 AO356_18670: AO356_18670 - phage antirepressor protein, at 4,194,310 to 4,194,819 _18670 Position (kb) 4193 4194Strain fitness (log2 ratio) -2 -1 0 1 2at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.286 kb on + strand, within AO356_18655at 4192.356 kb on + strand, within AO356_18655at 4192.356 kb on + strand, within AO356_18655at 4192.356 kb on + strand, within AO356_18655at 4192.362 kb on + strand, within AO356_18655at 4192.424 kb on + strand, within AO356_18655at 4192.424 kb on + strand, within AO356_18655at 4192.452 kb on + strand, within AO356_18655at 4192.452 kb on + strand, within AO356_18655at 4192.557 kb on + strand, within AO356_18655at 4192.557 kb on + strand, within AO356_18655at 4192.563 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.566 kb on + strand, within AO356_18655at 4192.595 kb on + strand, within AO356_18655at 4192.595 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.604 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.720 kb on + strand, within AO356_18655at 4192.828 kb on + strand, within AO356_18655at 4192.836 kb on + strand, within AO356_18655at 4192.863 kb on - strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.941 kb on + strand, within AO356_18655at 4192.942 kb on - strand, within AO356_18655at 4193.009 kb on + strand, within AO356_18655at 4193.009 kb on + strand, within AO356_18655at 4193.032 kb on + strand, within AO356_18655at 4193.032 kb on + strand, within AO356_18655at 4193.165 kb on + strandat 4193.551 kb on + strand, within AO356_18660at 4193.616 kb on - strandat 4193.643 kb on + strandat 4193.643 kb on + strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.644 kb on - strandat 4193.663 kb on + strandat 4193.663 kb on + strandat 4193.664 kb on - strandat 4193.664 kb on - strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.708 kb on + strandat 4193.709 kb on - strandat 4193.709 kb on - strandat 4193.709 kb on - strandat 4193.709 kb on - strandat 4193.728 kb on + strandat 4193.728 kb on + strandat 4193.729 kb on - strandat 4193.729 kb on - strandat 4193.729 kb on - strandat 4193.729 kb on - strandat 4193.758 kb on + strand, within AO356_18665at 4193.758 kb on + strand, within AO356_18665at 4193.758 kb on + strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.759 kb on - strand, within AO356_18665at 4193.820 kb on + strand, within AO356_18665at 4193.820 kb on + strand, within AO356_18665at 4193.820 kb on + strand, within AO356_18665at 4193.846 kb on + strand, within AO356_18665at 4193.846 kb on + strand, within AO356_18665at 4193.846 kb on + strand, within AO356_18665at 4193.847 kb on - strand, within AO356_18665at 4193.847 kb on - strand, within AO356_18665at 4194.027 kb on + strandat 4194.027 kb on + strandat 4194.027 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.182 kb on + strandat 4194.183 kb on - strandat 4194.183 kb on - strandat 4194.183 kb on - strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.192 kb on + strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.193 kb on - strandat 4194.256 kb on + strandat 4194.257 kb on - strandat 4194.474 kb on + strand, within AO356_18670at 4194.474 kb on + strand, within AO356_18670at 4194.474 kb on + strand, within AO356_18670at 4194.474 kb on + strand, within AO356_18670at 4194.475 kb on - strand, within AO356_18670at 4194.489 kb on + strand, within AO356_18670at 4194.489 kb on + strand, within AO356_18670at 4194.489 kb on + strand, within AO356_18670at 4194.489 kb on + strand, within AO356_18670at 4194.489 kb on + strand, within AO356_18670at 4194.490 kb on - strand, within AO356_18670at 4194.490 kb on - strand, within AO356_18670at 4194.490 kb on - strand, within AO356_18670at 4194.490 kb on - strand, within AO356_18670at 4194.490 kb on - strand, within AO356_18670at 4194.490 kb on - strand, within AO356_18670at 4194.524 kb on - strand, within AO356_18670at 4194.524 kb on - strand, within AO356_18670at 4194.524 kb on - strand, within AO356_18670at 4194.524 kb on - strand, within AO356_18670at 4194.557 kb on + strand, within AO356_18670at 4194.557 kb on + strand, within AO356_18670at 4194.570 kb on - strand, within AO356_18670at 4194.570 kb on - strand, within AO356_18670at 4194.590 kb on + strand, within AO356_18670at 4194.591 kb on - strand, within AO356_18670at 4194.591 kb on - strand, within AO356_18670

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
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4,192,286 + AO356_18655 0.29 -0.1
4,192,286 + AO356_18655 0.29 +0.5
4,192,286 + AO356_18655 0.29 +0.8
4,192,286 + AO356_18655 0.29 +0.1
4,192,286 + AO356_18655 0.29 +1.1
4,192,356 + AO356_18655 0.35 -0.4
4,192,356 + AO356_18655 0.35 -0.2
4,192,356 + AO356_18655 0.35 -1.1
4,192,362 + AO356_18655 0.35 +0.3
4,192,424 + AO356_18655 0.40 +1.5
4,192,424 + AO356_18655 0.40 +0.6
4,192,452 + AO356_18655 0.42 +0.2
4,192,452 + AO356_18655 0.42 +0.2
4,192,557 + AO356_18655 0.50 -0.4
4,192,557 + AO356_18655 0.50 -0.4
4,192,563 + AO356_18655 0.50 -0.6
4,192,566 + AO356_18655 0.51 -0.2
4,192,566 + AO356_18655 0.51 +0.8
4,192,566 + AO356_18655 0.51 -0.4
4,192,566 + AO356_18655 0.51 +0.9
4,192,566 + AO356_18655 0.51 +0.1
4,192,595 + AO356_18655 0.53 +0.2
4,192,595 + AO356_18655 0.53 -0.0
4,192,604 + AO356_18655 0.53 +0.9
4,192,604 + AO356_18655 0.53 +0.4
4,192,604 + AO356_18655 0.53 +0.5
4,192,604 + AO356_18655 0.53 -0.5
4,192,604 + AO356_18655 0.53 +0.1
4,192,604 + AO356_18655 0.53 +0.1
4,192,604 + AO356_18655 0.53 +0.1
4,192,720 + AO356_18655 0.62 -0.9
4,192,720 + AO356_18655 0.62 -0.3
4,192,720 + AO356_18655 0.62 -0.1
4,192,720 + AO356_18655 0.62 +0.3
4,192,720 + AO356_18655 0.62 -0.7
4,192,828 + AO356_18655 0.70 +0.6
4,192,836 + AO356_18655 0.71 +0.0
4,192,863 - AO356_18655 0.73 -0.7
4,192,941 + AO356_18655 0.79 -0.5
4,192,941 + AO356_18655 0.79 +0.6
4,192,941 + AO356_18655 0.79 -0.6
4,192,941 + AO356_18655 0.79 -0.2
4,192,941 + AO356_18655 0.79 -0.4
4,192,941 + AO356_18655 0.79 +0.5
4,192,941 + AO356_18655 0.79 -0.4
4,192,942 - AO356_18655 0.79 -1.2
4,193,009 + AO356_18655 0.84 -0.4
4,193,009 + AO356_18655 0.84 +0.2
4,193,032 + AO356_18655 0.86 +0.1
4,193,032 + AO356_18655 0.86 +0.4
4,193,165 + +0.3
4,193,551 + AO356_18660 0.83 +0.6
4,193,616 - -0.1
4,193,643 + +0.6
4,193,643 + +0.1
4,193,644 - -0.1
4,193,644 - -0.2
4,193,644 - -0.3
4,193,644 - -2.1
4,193,644 - +0.3
4,193,663 + -0.9
4,193,663 + +0.7
4,193,664 - +0.4
4,193,664 - +0.1
4,193,708 + +0.4
4,193,708 + +0.0
4,193,708 + +1.6
4,193,708 + -1.8
4,193,708 + +0.7
4,193,709 - -0.2
4,193,709 - +0.3
4,193,709 - -0.2
4,193,709 - +0.2
4,193,728 + +0.6
4,193,728 + +0.3
4,193,729 - +0.1
4,193,729 - +0.7
4,193,729 - +1.0
4,193,729 - +0.1
4,193,758 + AO356_18665 0.20 +0.1
4,193,758 + AO356_18665 0.20 +0.6
4,193,758 + AO356_18665 0.20 +0.5
4,193,759 - AO356_18665 0.20 +0.1
4,193,759 - AO356_18665 0.20 -0.9
4,193,759 - AO356_18665 0.20 +0.5
4,193,759 - AO356_18665 0.20 -0.2
4,193,759 - AO356_18665 0.20 +0.2
4,193,759 - AO356_18665 0.20 +0.9
4,193,820 + AO356_18665 0.45 +1.4
4,193,820 + AO356_18665 0.45 +1.2
4,193,820 + AO356_18665 0.45 -0.4
4,193,846 + AO356_18665 0.56 -2.1
4,193,846 + AO356_18665 0.56 +1.1
4,193,846 + AO356_18665 0.56 +0.1
4,193,847 - AO356_18665 0.56 +0.3
4,193,847 - AO356_18665 0.56 +0.1
4,194,027 + +0.4
4,194,027 + +0.6
4,194,027 + -0.9
4,194,182 + +0.4
4,194,182 + +0.6
4,194,182 + +0.4
4,194,182 + +2.1
4,194,182 + -0.1
4,194,183 - -0.6
4,194,183 - -0.5
4,194,183 - +0.3
4,194,192 + -0.3
4,194,192 + +0.8
4,194,192 + -0.0
4,194,192 + +0.4
4,194,192 + +1.2
4,194,192 + -0.7
4,194,192 + +0.6
4,194,193 - -0.7
4,194,193 - +0.6
4,194,193 - -0.1
4,194,193 - +1.0
4,194,193 - -0.3
4,194,193 - -1.0
4,194,193 - -0.9
4,194,256 + -0.7
4,194,257 - +0.2
4,194,474 + AO356_18670 0.32 -0.7
4,194,474 + AO356_18670 0.32 -1.0
4,194,474 + AO356_18670 0.32 -0.1
4,194,474 + AO356_18670 0.32 -0.1
4,194,475 - AO356_18670 0.32 +0.9
4,194,489 + AO356_18670 0.35 -0.2
4,194,489 + AO356_18670 0.35 +0.3
4,194,489 + AO356_18670 0.35 -0.8
4,194,489 + AO356_18670 0.35 -0.4
4,194,489 + AO356_18670 0.35 +0.5
4,194,490 - AO356_18670 0.35 +0.7
4,194,490 - AO356_18670 0.35 -1.2
4,194,490 - AO356_18670 0.35 +0.6
4,194,490 - AO356_18670 0.35 +0.5
4,194,490 - AO356_18670 0.35 +0.3
4,194,490 - AO356_18670 0.35 -0.5
4,194,524 - AO356_18670 0.42 -0.7
4,194,524 - AO356_18670 0.42 -0.1
4,194,524 - AO356_18670 0.42 -0.1
4,194,524 - AO356_18670 0.42 -1.9
4,194,557 + AO356_18670 0.48 -1.0
4,194,557 + AO356_18670 0.48 -0.0
4,194,570 - AO356_18670 0.51 +0.5
4,194,570 - AO356_18670 0.51 -1.4
4,194,590 + AO356_18670 0.55 +0.1
4,194,591 - AO356_18670 0.55 +1.1
4,194,591 - AO356_18670 0.55 -0.2

Or see this region's nucleotide sequence