Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03340

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03330 and AO356_03335 are separated by 169 nucleotidesAO356_03335 and AO356_03340 are separated by 451 nucleotidesAO356_03340 and AO356_03345 are separated by 55 nucleotides AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627 _03330 AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132 _03335 AO356_03340: AO356_03340 - hypothetical protein, at 742,584 to 743,486 _03340 AO356_03345: AO356_03345 - hypothetical protein, at 743,542 to 745,536 _03345 Position (kb) 742 743 744Strain fitness (log2 ratio) -2 -1 0 1at 741.656 kb on + strandat 741.657 kb on - strandat 741.665 kb on + strandat 741.665 kb on + strandat 741.669 kb on + strandat 741.669 kb on + strandat 741.669 kb on + strandat 741.670 kb on - strandat 741.670 kb on - strandat 741.670 kb on - strandat 741.903 kb on + strand, within AO356_03335at 742.076 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.078 kb on + strand, within AO356_03335at 742.079 kb on - strand, within AO356_03335at 742.079 kb on - strand, within AO356_03335at 742.079 kb on - strand, within AO356_03335at 742.113 kb on + strandat 742.119 kb on + strandat 742.120 kb on - strandat 742.132 kb on + strandat 742.133 kb on - strandat 742.156 kb on - strandat 742.156 kb on - strandat 742.156 kb on - strandat 742.194 kb on + strandat 742.207 kb on + strandat 742.207 kb on + strandat 742.208 kb on - strandat 742.208 kb on - strandat 742.291 kb on + strandat 742.292 kb on - strandat 742.292 kb on - strandat 742.411 kb on + strandat 742.417 kb on + strandat 742.453 kb on + strandat 742.453 kb on + strandat 742.461 kb on - strandat 742.461 kb on - strandat 742.464 kb on - strandat 742.464 kb on - strandat 742.483 kb on - strandat 742.483 kb on - strandat 742.483 kb on - strandat 742.537 kb on + strandat 742.655 kb on + strandat 742.655 kb on + strandat 742.658 kb on - strandat 742.669 kb on - strandat 742.738 kb on - strand, within AO356_03340at 742.755 kb on + strand, within AO356_03340at 742.756 kb on - strand, within AO356_03340at 742.935 kb on + strand, within AO356_03340at 742.944 kb on - strand, within AO356_03340at 742.944 kb on - strand, within AO356_03340at 742.953 kb on + strand, within AO356_03340at 742.954 kb on - strand, within AO356_03340at 743.165 kb on - strand, within AO356_03340at 743.167 kb on - strand, within AO356_03340at 743.167 kb on - strand, within AO356_03340at 743.168 kb on + strand, within AO356_03340at 743.169 kb on - strand, within AO356_03340at 743.253 kb on + strand, within AO356_03340at 743.253 kb on + strand, within AO356_03340at 743.258 kb on - strand, within AO356_03340at 743.369 kb on - strand, within AO356_03340at 743.497 kb on - strandat 743.497 kb on - strandat 743.497 kb on - strandat 743.497 kb on - strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.532 kb on - strandat 743.532 kb on - strandat 743.532 kb on - strandat 743.532 kb on - strandat 743.567 kb on + strandat 743.567 kb on + strandat 743.567 kb on + strandat 743.688 kb on + strandat 743.950 kb on - strand, within AO356_03345at 743.999 kb on + strand, within AO356_03345at 743.999 kb on + strand, within AO356_03345at 744.091 kb on + strand, within AO356_03345at 744.114 kb on + strand, within AO356_03345at 744.115 kb on - strand, within AO356_03345at 744.139 kb on + strand, within AO356_03345at 744.140 kb on - strand, within AO356_03345at 744.245 kb on - strand, within AO356_03345at 744.309 kb on + strand, within AO356_03345at 744.352 kb on - strand, within AO356_03345at 744.354 kb on + strand, within AO356_03345at 744.354 kb on + strand, within AO356_03345at 744.355 kb on - strand, within AO356_03345at 744.378 kb on + strand, within AO356_03345at 744.378 kb on + strand, within AO356_03345at 744.379 kb on - strand, within AO356_03345at 744.380 kb on + strand, within AO356_03345at 744.466 kb on - strand, within AO356_03345at 744.470 kb on - strand, within AO356_03345at 744.470 kb on - strand, within AO356_03345at 744.472 kb on + strand, within AO356_03345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
remove
741,656 + +0.9
741,657 - +0.7
741,665 + +0.8
741,665 + -0.8
741,669 + +0.1
741,669 + -0.2
741,669 + +0.1
741,670 - +0.2
741,670 - -0.2
741,670 - +1.1
741,903 + AO356_03335 0.32 +0.2
742,076 + AO356_03335 0.83 -0.5
742,078 + AO356_03335 0.84 -0.4
742,078 + AO356_03335 0.84 -0.2
742,078 + AO356_03335 0.84 +0.5
742,078 + AO356_03335 0.84 +0.7
742,078 + AO356_03335 0.84 -0.2
742,078 + AO356_03335 0.84 -0.1
742,078 + AO356_03335 0.84 -0.3
742,079 - AO356_03335 0.84 -0.0
742,079 - AO356_03335 0.84 -0.4
742,079 - AO356_03335 0.84 -0.9
742,113 + -0.1
742,119 + +1.3
742,120 - +0.0
742,132 + +1.6
742,133 - -0.7
742,156 - -0.2
742,156 - +1.0
742,156 - -0.5
742,194 + +0.2
742,207 + +0.1
742,207 + -0.7
742,208 - -0.4
742,208 - +0.0
742,291 + +0.5
742,292 - +0.2
742,292 - +0.3
742,411 + +1.2
742,417 + -0.0
742,453 + -0.5
742,453 + +0.1
742,461 - +0.3
742,461 - +1.4
742,464 - -2.7
742,464 - -1.9
742,483 - +0.2
742,483 - -0.4
742,483 - -0.4
742,537 + +0.3
742,655 + -1.5
742,655 + +0.2
742,658 - -0.5
742,669 - +0.9
742,738 - AO356_03340 0.17 -0.2
742,755 + AO356_03340 0.19 +1.2
742,756 - AO356_03340 0.19 -0.7
742,935 + AO356_03340 0.39 +0.1
742,944 - AO356_03340 0.40 -0.4
742,944 - AO356_03340 0.40 -0.2
742,953 + AO356_03340 0.41 +1.0
742,954 - AO356_03340 0.41 -0.3
743,165 - AO356_03340 0.64 +0.6
743,167 - AO356_03340 0.65 -0.2
743,167 - AO356_03340 0.65 +0.4
743,168 + AO356_03340 0.65 -0.4
743,169 - AO356_03340 0.65 -0.6
743,253 + AO356_03340 0.74 -2.3
743,253 + AO356_03340 0.74 +1.6
743,258 - AO356_03340 0.75 +1.1
743,369 - AO356_03340 0.87 -1.8
743,497 - -1.2
743,497 - +0.5
743,497 - +0.2
743,497 - -0.7
743,531 + -0.3
743,531 + -1.1
743,531 + +0.1
743,532 - +0.5
743,532 - +0.2
743,532 - +0.8
743,532 - -0.2
743,567 + -1.0
743,567 + -1.6
743,567 + -0.7
743,688 + -0.0
743,950 - AO356_03345 0.20 +0.6
743,999 + AO356_03345 0.23 -0.4
743,999 + AO356_03345 0.23 -0.4
744,091 + AO356_03345 0.28 -0.4
744,114 + AO356_03345 0.29 -1.4
744,115 - AO356_03345 0.29 -1.0
744,139 + AO356_03345 0.30 -1.2
744,140 - AO356_03345 0.30 -1.7
744,245 - AO356_03345 0.35 +0.6
744,309 + AO356_03345 0.38 -1.0
744,352 - AO356_03345 0.41 -2.6
744,354 + AO356_03345 0.41 -1.0
744,354 + AO356_03345 0.41 -2.4
744,355 - AO356_03345 0.41 -1.4
744,378 + AO356_03345 0.42 -0.7
744,378 + AO356_03345 0.42 -1.0
744,379 - AO356_03345 0.42 -0.0
744,380 + AO356_03345 0.42 -0.4
744,466 - AO356_03345 0.46 -0.7
744,470 - AO356_03345 0.47 -0.0
744,470 - AO356_03345 0.47 -1.0
744,472 + AO356_03345 0.47 -1.7

Or see this region's nucleotide sequence