Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3317

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3316 and Dshi_3317 are separated by 224 nucleotidesDshi_3317 and Dshi_3318 are separated by 156 nucleotides Dshi_3316: Dshi_3316 - phosphoserine phosphatase SerB (RefSeq), at 3,478,598 to 3,479,476 _3316 Dshi_3317: Dshi_3317 - phosphoserine aminotransferase (RefSeq), at 3,479,701 to 3,480,855 _3317 Dshi_3318: Dshi_3318 - D-3-phosphoglycerate dehydrogenase (RefSeq), at 3,481,012 to 3,482,607 _3318 Position (kb) 3479 3480 3481Strain fitness (log2 ratio) -1 0 1at 3479.558 kb on + strandat 3480.955 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
3,479,558 + -1.3
3,480,955 - +0.1

Or see this region's nucleotide sequence