Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2655

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2654 and Dshi_2655 are separated by 46 nucleotidesDshi_2655 and Dshi_2656 are separated by 256 nucleotides Dshi_2654: Dshi_2654 - thioredoxin reductase (RefSeq), at 2,809,223 to 2,810,221 _2654 Dshi_2655: Dshi_2655 - Cytochrome-c peroxidase (RefSeq), at 2,810,268 to 2,811,320 _2655 Dshi_2656: Dshi_2656 - sulfate adenylyltransferase (RefSeq), at 2,811,577 to 2,813,652 _2656 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -3 -2 -1 0 1at 2810.271 kb on + strandat 2810.433 kb on - strand, within Dshi_2655at 2810.433 kb on - strand, within Dshi_2655at 2810.443 kb on + strand, within Dshi_2655at 2810.499 kb on + strand, within Dshi_2655at 2810.623 kb on + strand, within Dshi_2655at 2810.644 kb on - strand, within Dshi_2655at 2810.644 kb on - strand, within Dshi_2655at 2810.869 kb on - strand, within Dshi_2655at 2810.874 kb on - strand, within Dshi_2655at 2810.916 kb on + strand, within Dshi_2655at 2810.942 kb on - strand, within Dshi_2655at 2810.965 kb on + strand, within Dshi_2655at 2810.973 kb on - strand, within Dshi_2655at 2810.973 kb on - strand, within Dshi_2655at 2811.002 kb on + strand, within Dshi_2655at 2811.094 kb on - strand, within Dshi_2655at 2811.454 kb on - strandat 2811.566 kb on + strandat 2811.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,810,271 + -0.1
2,810,433 - Dshi_2655 0.16 -0.5
2,810,433 - Dshi_2655 0.16 -0.7
2,810,443 + Dshi_2655 0.17 +0.1
2,810,499 + Dshi_2655 0.22 -1.9
2,810,623 + Dshi_2655 0.34 -0.1
2,810,644 - Dshi_2655 0.36 -0.5
2,810,644 - Dshi_2655 0.36 +0.1
2,810,869 - Dshi_2655 0.57 -1.7
2,810,874 - Dshi_2655 0.58 -1.2
2,810,916 + Dshi_2655 0.62 -0.0
2,810,942 - Dshi_2655 0.64 -0.6
2,810,965 + Dshi_2655 0.66 -1.6
2,810,973 - Dshi_2655 0.67 -0.9
2,810,973 - Dshi_2655 0.67 -1.1
2,811,002 + Dshi_2655 0.70 -2.0
2,811,094 - Dshi_2655 0.78 +0.3
2,811,454 - +0.7
2,811,566 + -1.4
2,811,765 + -3.3

Or see this region's nucleotide sequence