Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2573

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2571 and Dshi_2572 are separated by 43 nucleotidesDshi_2572 and Dshi_2573 are separated by 106 nucleotidesDshi_2573 and Dshi_2574 are separated by 270 nucleotidesDshi_2574 and Dshi_2575 are separated by 88 nucleotides Dshi_2571: Dshi_2571 - RNA methyltransferase, TrmH family, group 3 (RefSeq), at 2,738,741 to 2,739,532 _2571 Dshi_2572: Dshi_2572 - hypothetical protein (RefSeq), at 2,739,576 to 2,739,908 _2572 Dshi_2573: Dshi_2573 - hypothetical protein (RefSeq), at 2,740,015 to 2,740,470 _2573 Dshi_2574: Dshi_2574 - CoA-binding domain protein (RefSeq), at 2,740,741 to 2,741,226 _2574 Dshi_2575: Dshi_2575 - phosphoribosyl-ATP pyrophosphohydrolase (RefSeq), at 2,741,315 to 2,741,623 _2575 Position (kb) 2740 2741Strain fitness (log2 ratio) -2 -1 0 1 2at 2739.025 kb on + strand, within Dshi_2571at 2739.055 kb on + strand, within Dshi_2571at 2739.058 kb on - strand, within Dshi_2571at 2739.216 kb on - strand, within Dshi_2571at 2739.284 kb on - strand, within Dshi_2571at 2739.342 kb on + strand, within Dshi_2571at 2739.520 kb on + strandat 2739.536 kb on - strandat 2739.568 kb on - strandat 2739.640 kb on - strand, within Dshi_2572at 2739.647 kb on + strand, within Dshi_2572at 2739.660 kb on - strand, within Dshi_2572at 2739.660 kb on - strand, within Dshi_2572at 2739.761 kb on - strand, within Dshi_2572at 2739.775 kb on + strand, within Dshi_2572at 2739.783 kb on - strand, within Dshi_2572at 2739.783 kb on - strand, within Dshi_2572at 2739.798 kb on + strand, within Dshi_2572at 2739.885 kb on - strandat 2740.040 kb on - strandat 2740.078 kb on + strand, within Dshi_2573at 2740.087 kb on - strand, within Dshi_2573at 2740.136 kb on + strand, within Dshi_2573at 2740.162 kb on - strand, within Dshi_2573at 2740.182 kb on - strand, within Dshi_2573at 2740.247 kb on - strand, within Dshi_2573at 2740.264 kb on + strand, within Dshi_2573at 2740.264 kb on + strand, within Dshi_2573at 2740.277 kb on - strand, within Dshi_2573at 2740.299 kb on + strand, within Dshi_2573at 2740.325 kb on - strand, within Dshi_2573at 2740.425 kb on - strandat 2740.459 kb on + strandat 2740.459 kb on + strandat 2740.467 kb on - strandat 2740.478 kb on + strandat 2740.478 kb on + strandat 2740.486 kb on - strandat 2740.502 kb on + strandat 2740.554 kb on - strandat 2740.607 kb on + strandat 2740.683 kb on - strandat 2740.815 kb on - strand, within Dshi_2574at 2741.201 kb on - strandat 2741.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,739,025 + Dshi_2571 0.36 +0.4
2,739,055 + Dshi_2571 0.40 +1.2
2,739,058 - Dshi_2571 0.40 -1.2
2,739,216 - Dshi_2571 0.60 -0.4
2,739,284 - Dshi_2571 0.69 +0.4
2,739,342 + Dshi_2571 0.76 -0.2
2,739,520 + -1.8
2,739,536 - +1.9
2,739,568 - +0.6
2,739,640 - Dshi_2572 0.19 -0.2
2,739,647 + Dshi_2572 0.21 -0.2
2,739,660 - Dshi_2572 0.25 -0.1
2,739,660 - Dshi_2572 0.25 +0.9
2,739,761 - Dshi_2572 0.56 -1.4
2,739,775 + Dshi_2572 0.60 +0.1
2,739,783 - Dshi_2572 0.62 +0.7
2,739,783 - Dshi_2572 0.62 +0.8
2,739,798 + Dshi_2572 0.67 -0.3
2,739,885 - +0.1
2,740,040 - +0.2
2,740,078 + Dshi_2573 0.14 +0.2
2,740,087 - Dshi_2573 0.16 +0.2
2,740,136 + Dshi_2573 0.27 -0.8
2,740,162 - Dshi_2573 0.32 -0.2
2,740,182 - Dshi_2573 0.37 -0.1
2,740,247 - Dshi_2573 0.51 +0.3
2,740,264 + Dshi_2573 0.55 -0.3
2,740,264 + Dshi_2573 0.55 -0.0
2,740,277 - Dshi_2573 0.57 +0.5
2,740,299 + Dshi_2573 0.62 -0.8
2,740,325 - Dshi_2573 0.68 +0.6
2,740,425 - +0.0
2,740,459 + -0.7
2,740,459 + +0.6
2,740,467 - -0.4
2,740,478 + +1.5
2,740,478 + +0.0
2,740,486 - -0.4
2,740,502 + -0.3
2,740,554 - -0.9
2,740,607 + -0.4
2,740,683 - -0.6
2,740,815 - Dshi_2574 0.15 -1.7
2,741,201 - -0.3
2,741,213 + -0.6

Or see this region's nucleotide sequence