Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1547

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1546 and Dshi_1547 are separated by 55 nucleotidesDshi_1547 and Dshi_1548 are separated by 314 nucleotides Dshi_1546: Dshi_1546 - protein of unknown function DUF502 (RefSeq), at 1,608,891 to 1,609,703 _1546 Dshi_1547: Dshi_1547 - PfkB domain protein (RefSeq), at 1,609,759 to 1,610,724 _1547 Dshi_1548: Dshi_1548 - ribosomal protein S2 (RefSeq), at 1,611,039 to 1,611,818 _1548 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -3 -2 -1 0 1at 1608.821 kb on - strandat 1609.211 kb on - strand, within Dshi_1546at 1609.448 kb on - strand, within Dshi_1546at 1609.666 kb on - strandat 1609.937 kb on + strand, within Dshi_1547at 1609.980 kb on - strand, within Dshi_1547at 1610.065 kb on - strand, within Dshi_1547at 1610.211 kb on - strand, within Dshi_1547at 1610.212 kb on - strand, within Dshi_1547at 1610.252 kb on - strand, within Dshi_1547at 1610.412 kb on - strand, within Dshi_1547at 1610.419 kb on - strand, within Dshi_1547at 1610.613 kb on - strand, within Dshi_1547at 1610.660 kb on - strandat 1610.670 kb on - strandat 1610.688 kb on + strandat 1610.762 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
1,608,821 - +0.3
1,609,211 - Dshi_1546 0.39 -0.3
1,609,448 - Dshi_1546 0.69 -2.8
1,609,666 - +0.6
1,609,937 + Dshi_1547 0.18 +0.5
1,609,980 - Dshi_1547 0.23 -1.4
1,610,065 - Dshi_1547 0.32 +0.2
1,610,211 - Dshi_1547 0.47 -0.5
1,610,212 - Dshi_1547 0.47 -0.9
1,610,252 - Dshi_1547 0.51 +0.0
1,610,412 - Dshi_1547 0.68 -1.1
1,610,419 - Dshi_1547 0.68 +1.0
1,610,613 - Dshi_1547 0.88 -1.9
1,610,660 - -1.2
1,610,670 - -0.1
1,610,688 + +0.2
1,610,762 - +1.5

Or see this region's nucleotide sequence