Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0674

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0672 and Dshi_0673 overlap by 20 nucleotidesDshi_0673 and Dshi_0674 are separated by 59 nucleotidesDshi_0674 and Dshi_0675 are separated by 154 nucleotides Dshi_0672: Dshi_0672 - short-chain dehydrogenase/reductase SDR (RefSeq), at 677,442 to 678,248 _0672 Dshi_0673: Dshi_0673 - hypothetical protein (RefSeq), at 678,229 to 678,606 _0673 Dshi_0674: Dshi_0674 - Coproporphyrinogen oxidase (RefSeq), at 678,666 to 679,559 _0674 Dshi_0675: Dshi_0675 - gamma-glutamyltransferase (RefSeq), at 679,714 to 681,504 _0675 Position (kb) 678 679 680Strain fitness (log2 ratio) -1 0 1 2at 678.391 kb on - strand, within Dshi_0673at 678.434 kb on - strand, within Dshi_0673at 678.442 kb on + strand, within Dshi_0673at 678.463 kb on + strand, within Dshi_0673at 679.643 kb on - strandat 679.681 kb on + strandat 679.777 kb on - strandat 680.213 kb on - strand, within Dshi_0675at 680.481 kb on + strand, within Dshi_0675at 680.528 kb on - strand, within Dshi_0675

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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678,391 - Dshi_0673 0.43 -0.6
678,434 - Dshi_0673 0.54 -0.1
678,442 + Dshi_0673 0.56 +0.4
678,463 + Dshi_0673 0.62 -0.6
679,643 - -1.4
679,681 + -0.6
679,777 - +2.0
680,213 - Dshi_0675 0.28 -0.1
680,481 + Dshi_0675 0.43 -0.2
680,528 - Dshi_0675 0.45 -0.6

Or see this region's nucleotide sequence