Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0370 and Dshi_0371 are separated by 18 nucleotides Dshi_0371 and Dshi_0372 are separated by 100 nucleotides Dshi_0372 and Dshi_0373 are separated by 144 nucleotides
Dshi_0370: Dshi_0370 - hypothetical protein (RefSeq), at 353,964 to 354,554
_0370
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Dshi_0372: Dshi_0372 - hypothetical protein (RefSeq), at 355,405 to 355,728
_0372
Dshi_0373: Dshi_0373 - Long-chain-fatty-acid--CoA ligase (RefSeq), at 355,873 to 357,843
_0373
Position (kb) 355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 354.424 kb on + strand, within Dshi_0370 at 354.426 kb on - strand, within Dshi_0370 at 354.489 kb on + strand, within Dshi_0370 at 354.502 kb on - strand at 354.517 kb on - strand at 354.571 kb on - strand at 354.618 kb on - strand at 354.645 kb on + strand at 354.694 kb on - strand, within Dshi_0371 at 354.711 kb on + strand, within Dshi_0371 at 354.731 kb on + strand, within Dshi_0371 at 354.769 kb on + strand, within Dshi_0371 at 354.803 kb on - strand, within Dshi_0371 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371 at 355.010 kb on + strand, within Dshi_0371 at 355.022 kb on + strand, within Dshi_0371 at 355.199 kb on + strand, within Dshi_0371 at 355.265 kb on + strand at 355.459 kb on + strand, within Dshi_0372 at 355.535 kb on - strand, within Dshi_0372 at 355.575 kb on + strand, within Dshi_0372 at 355.623 kb on + strand, within Dshi_0372 at 355.693 kb on - strand, within Dshi_0372 at 355.697 kb on - strand at 355.912 kb on + strand at 355.960 kb on - strand at 355.990 kb on + strand at 355.997 kb on - strand at 355.998 kb on - strand at 356.066 kb on - strand at 356.066 kb on - strand at 356.109 kb on - strand, within Dshi_0373 at 356.125 kb on + strand, within Dshi_0373 at 356.200 kb on - strand, within Dshi_0373 at 356.214 kb on + strand, within Dshi_0373 at 356.287 kb on - strand, within Dshi_0373 at 356.292 kb on + strand, within Dshi_0373 at 356.297 kb on + strand, within Dshi_0373 at 356.448 kb on + strand, within Dshi_0373 at 356.456 kb on - strand, within Dshi_0373 at 356.483 kb on - strand, within Dshi_0373 at 356.488 kb on + strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.571 kb on - strand, within Dshi_0373 at 356.619 kb on + strand, within Dshi_0373 at 356.635 kb on - strand, within Dshi_0373 at 356.637 kb on - strand, within Dshi_0373 at 356.680 kb on - strand, within Dshi_0373 at 356.706 kb on - strand, within Dshi_0373 at 356.723 kb on - strand, within Dshi_0373
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 354,424 + Dshi_0370 0.78 +2.8 354,426 - Dshi_0370 0.78 +0.2 354,489 + Dshi_0370 0.89 -1.6 354,502 - +0.1 354,517 - +0.4 354,571 - +1.1 354,618 - -0.1 354,645 + +0.2 354,694 - Dshi_0371 0.17 -0.2 354,711 + Dshi_0371 0.19 -1.0 354,731 + Dshi_0371 0.22 -0.7 354,769 + Dshi_0371 0.27 -0.5 354,803 - Dshi_0371 0.31 -0.4 354,926 + Dshi_0371 0.48 -1.3 354,940 - Dshi_0371 0.50 -0.8 355,010 + Dshi_0371 0.60 -0.6 355,022 + Dshi_0371 0.61 +0.1 355,199 + Dshi_0371 0.86 +0.1 355,265 + -0.5 355,459 + Dshi_0372 0.17 +0.7 355,535 - Dshi_0372 0.40 -0.4 355,575 + Dshi_0372 0.52 +0.4 355,623 + Dshi_0372 0.67 +0.1 355,693 - Dshi_0372 0.89 +0.3 355,697 - +0.3 355,912 + -0.2 355,960 - +1.1 355,990 + +1.5 355,997 - -1.1 355,998 - +0.0 356,066 - +0.3 356,066 - +0.9 356,109 - Dshi_0373 0.12 +0.8 356,125 + Dshi_0373 0.13 -0.3 356,200 - Dshi_0373 0.17 +0.9 356,214 + Dshi_0373 0.17 -0.2 356,287 - Dshi_0373 0.21 +0.9 356,292 + Dshi_0373 0.21 -1.0 356,297 + Dshi_0373 0.22 +0.9 356,448 + Dshi_0373 0.29 +0.3 356,456 - Dshi_0373 0.30 -0.6 356,483 - Dshi_0373 0.31 +1.2 356,488 + Dshi_0373 0.31 -3.3 356,491 - Dshi_0373 0.31 +0.1 356,491 - Dshi_0373 0.31 +1.3 356,571 - Dshi_0373 0.35 -0.6 356,619 + Dshi_0373 0.38 +0.4 356,635 - Dshi_0373 0.39 -1.3 356,637 - Dshi_0373 0.39 -0.3 356,680 - Dshi_0373 0.41 -0.9 356,706 - Dshi_0373 0.42 -0.5 356,723 - Dshi_0373 0.43 +0.2
Or see this region's nucleotide sequence