Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3554

Experiment: Bile salts 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bile salts 0.5 mg/ml
4,596,386	-				+0.5
4,596,411	-		BT3553	0.11	-0.9
4,596,413	-		BT3553	0.12	-0.4
4,596,520	-		BT3553	0.22	+0.9
4,596,537	-		BT3553	0.23	-1.7
4,596,590	+		BT3553	0.28	+0.5
4,596,601	-		BT3553	0.30	-0.5
4,596,601	-		BT3553	0.30	-0.9
4,596,686	+		BT3553	0.38	-2.3
4,596,756	-		BT3553	0.44	-1.0
4,596,756	-		BT3553	0.44	+0.5
4,596,758	-		BT3553	0.44	-2.5
4,596,803	-		BT3553	0.49	-0.9
4,596,838	+		BT3553	0.52	-2.5
4,596,838	+		BT3553	0.52	-1.0
4,596,935	-		BT3553	0.61	-1.1
4,596,935	-		BT3553	0.61	-1.2
4,596,938	-		BT3553	0.62	-2.1
4,596,938	-		BT3553	0.62	-2.3
4,596,940	+		BT3553	0.62	-0.4
4,596,940	+		BT3553	0.62	-1.4
4,596,941	-		BT3553	0.62	-1.8
4,596,941	-		BT3553	0.62	-1.0
4,596,941	-		BT3553	0.62	-3.0
4,596,941	-		BT3553	0.62	-0.8
4,596,944	+		BT3553	0.62	+0.0
4,596,945	-		BT3553	0.62	-2.5
4,596,970	+		BT3553	0.65	+1.0
4,596,970	+		BT3553	0.65	-1.1
4,596,999	+		BT3553	0.67	-2.9
4,597,002	-		BT3553	0.68	+0.1
4,597,003	+		BT3553	0.68	-3.1
4,597,003	+		BT3553	0.68	-1.2
4,597,010	+		BT3553	0.68	-1.2
4,597,048	+		BT3553	0.72	+0.3
4,597,049	-		BT3553	0.72	-0.9
4,597,061	+		BT3553	0.73	-1.9
4,597,091	-		BT3553	0.76	-0.6
4,597,136	-		BT3553	0.80	-1.1
4,597,235	-		BT3553	0.90	-0.0
4,597,265	+				-1.2
4,597,347	+				-1.5
4,597,485	+		BT3554	0.26	-1.9
4,597,623	+		BT3554	0.56	-2.2
4,597,640	+		BT3554	0.59	-3.0
4,597,657	-		BT3554	0.63	-4.3
4,597,679	-		BT3554	0.68	-2.5
4,597,698	+		BT3554	0.72	-2.5
4,597,699	-		BT3554	0.72	-1.5
4,597,699	-		BT3554	0.72	-3.4
4,597,782	-		BT3554	0.90	-1.9
4,597,789	+				+1.5
4,597,791	+				-2.6
4,597,792	-				-1.4
4,597,792	-				-1.4
4,597,852	-				-2.1
4,597,861	+				-0.9
4,597,878	+				-1.6
4,597,878	+				-0.1
4,597,879	-				+0.6
4,597,879	-				-1.1
4,597,879	-				-1.1
4,597,903	+				-0.4
4,597,918	+				+0.5
4,597,953	-				-1.5
4,598,021	+		BT3555	0.11	-1.0
4,598,022	-		BT3555	0.11	-1.3
4,598,044	+		BT3555	0.13	+0.5
4,598,061	-		BT3555	0.14	-0.1
4,598,061	-		BT3555	0.14	-1.5
4,598,062	+		BT3555	0.14	-2.2
4,598,063	-		BT3555	0.14	-2.6
4,598,072	+		BT3555	0.15	-0.9
4,598,116	+		BT3555	0.18	-1.5
4,598,199	+		BT3555	0.25	-1.7
4,598,213	+		BT3555	0.26	-0.9
4,598,214	-		BT3555	0.26	-0.9
4,598,334	-		BT3555	0.35	-0.5
4,598,427	-		BT3555	0.42	-1.1
4,598,464	-		BT3555	0.45	+0.1
4,598,488	-		BT3555	0.47	+0.5
4,598,488	-		BT3555	0.47	-1.4
4,598,538	+		BT3555	0.51	-1.4
4,598,538	+		BT3555	0.51	-3.0
4,598,538	+		BT3555	0.51	-3.4
4,598,539	-		BT3555	0.51	-1.1
4,598,540	+		BT3555	0.51	-2.2
4,598,540	+		BT3555	0.51	-1.2
4,598,543	+		BT3555	0.51	-0.1
4,598,543	+		BT3555	0.51	-0.6
4,598,544	-		BT3555	0.51	-0.5
4,598,546	+		BT3555	0.51	-0.9
4,598,610	+		BT3555	0.56	+1.0
4,598,679	-		BT3555	0.62	+0.5
4,598,690	-		BT3555	0.63	-1.5
4,598,693	+		BT3555	0.63	-2.1
4,598,693	+		BT3555	0.63	+0.3
4,598,693	+		BT3555	0.63	-1.1
4,598,699	+		BT3555	0.63	-0.5
4,598,699	+		BT3555	0.63	-0.7
4,598,700	-		BT3555	0.63	-0.5